Array 1 61363-58888 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIOTY010000001.1 Cupidesulfovibrio sp. SRB-5 SRB-5_scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 61362 32 100.0 34 ................................ AACAGTGAGACGCGCCGCGTCACATGGCGCGATA 61296 32 100.0 34 ................................ ACCCTGCACGCCGCCGATGCCGCCCGCCAGGTCC 61230 32 100.0 33 ................................ ATTTGCACTCTTTCCTAGCAACTCGCGCCCGTT 61165 32 100.0 33 ................................ TCCCGGTGCCTCGGCCTCTGCTTCCTCGTCTCC 61100 32 100.0 33 ................................ TTTGCGGTGAGTTGCACAGCCAGTTCCGCCCGT 61035 32 100.0 34 ................................ TCCCAGGGCAGCATGGGGCGGGGCGGCGCTTCGC 60969 32 100.0 34 ................................ TCCCAGTGACGCTCCGTGAAACCGCTGCGGCCAA 60903 32 100.0 34 ................................ GCGCGCGGTAATGACGATGTCGCAGACGGCCAAC 60837 32 100.0 33 ................................ CTTGCCGTAGCGGTTGATGCCGATGTCATACAG 60772 32 100.0 34 ................................ GTGCTTGTGCCGCGCCTTCGCAACAGCTTGCCTG 60706 32 100.0 34 ................................ AACCATCCGGACAGGAACTTGCGGTAGTCCACCA 60640 32 100.0 36 ................................ TGACCCAAGGGGGGCGCAAGCCCCCCCCCAAAGAGG 60572 32 100.0 35 ................................ CGTCCGCGCACGGTGTGGGACTTGCCAACCAAGCC 60505 32 100.0 33 ................................ TCATTCGGTGGGGGTTGCATCCTCCACCGGCAC 60440 32 100.0 34 ................................ TGGGACTGCGAGGTGCTGGCCCTGGCCGGAGCCC 60374 32 100.0 34 ................................ CCGTCTTGGCAATGCCTGGGACAACCTTTTGCGT 60308 32 100.0 35 ................................ CCTCGGGCCACGCTCTTCATGGGGCTGGCGCTCTC 60241 32 100.0 34 ................................ CATCGGTTGCGCCCCCTGTTGCGATAGTAGTGCA 60175 32 100.0 33 ................................ ACATTGTTGAGTCCGTCAATGTGAAGGCGGGTT 60110 32 100.0 33 ................................ CCGCCGTCTGCAATGGTCTCCATCGTGCTGCAA 60045 32 100.0 34 ................................ CACCAGCACCCCCGCTGGAAGGAAGTGATTGCGC 59979 32 100.0 35 ................................ AGGTACGCGGCAAACGCGGAAAGCTGCCCCTGCAT 59912 32 100.0 34 ................................ GAATCGCGGCGCGGGTCCGCACGATACTGCGGCC 59846 32 100.0 34 ................................ CATTCGAGCGTCTGCTGCACAGGGGTTGCGCCAA 59780 32 100.0 34 ................................ TATTTCTTGCGGTAGGGATTGGCGTTGGGATCAG 59714 32 100.0 36 ................................ TGGCCGAGGGATGGTGGCTGAAAGAGCCTGGCGAGG 59646 32 100.0 33 ................................ CCCGGCAATCACGCCCGCAAGGGCGGTGTCATA 59581 32 100.0 36 ................................ CTCCTCGATGTCAGCCGCCCGCTGAAGCCGCTGATC 59513 32 100.0 32 ................................ ATCGCGTCCGCAGCCCCGCAGGGCCTCGTCAC 59449 32 100.0 32 ................................ ACGGGCAGGCCGGAAAGGTCCACGGTCATGGC 59385 32 100.0 35 ................................ CATACCAGCCGGGGCAACATCGAAACCGCCGTTGC 59318 32 100.0 34 ................................ TGTTTCGAGTGGGCTGGATACAAGAGGGAGGGGC 59252 32 100.0 34 ................................ CAGCGCATCTTGCGGAACGCCGTCGGGGTAGCGC 59186 32 100.0 35 ................................ AAGCTCCCTGTGCCGCAGAACTCCAGGGTGCGCTA 59119 32 100.0 34 ................................ CACCAGGGACAGATTGGCGGAGTCGTCGAACGAA 59053 32 100.0 35 ................................ CGGTTCGACCCTGCCGACGGCCATACGCTGCGCCT 58986 32 100.0 35 ................................ AGCCCCAGAAATCGCCGGTAGGGGGTGTCCGCCTA 58919 32 81.2 0 .....C.T.C..G.T.......A......... | ========== ====== ====== ====== ================================ ==================================== ================== 38 32 99.5 34 GTCGCACCCTTCACGGGTGCGTGGGTTGAAAC # Left flank : CAATCGCTCATGCCGTGGAAATCCTGTGGATGTTGCGGATATGCCGGGGTTGCCGGGCAGGCCGGTCATGACCGGGTGTACCGGTTACGACCAGACGAGCCGGGTACAACCGGATGGGCCGGACATTGCCAGACATTGCCCGACATTGCCCGACATTGCCTGACATTGCCTGACGGGCTGCGCTGGCGCGGCGTCCTTCTCTTCCCCCGAAATGCGGGGCGGGTCAACCTGTACCCGCGAGCACACGAAAGACAGAGCCGTAGTGGCAGCACCGGTCACCGGGCGAGGCGCACGCCAGCCCCTAGCCGCATTGCACGCGACAACCGCGAACCTCATATGCACCGAAAAATCCCAGCGGGTCCGCGGTTGCTCAACAGCCTGCAATCACACACGTCCCCCCGCAGGGCAACACACTTTGCCCCTTTGCGCATGGACAGTCCGACCGATTCGCGGAATAGTGGTCGTCGATAAAAGCCCTCCGGAATGTCACGCTGGGGGGC # Right flank : AAAATCGGGGTGTCCGCCCGTCAGACCGGCAAGCCCCCCTCACGCCTCTCGGCACATTCCATGGCATCACACGCACGAAGGGGGCCTTGCGGCCCCCTTGTGCATGCCGAAGCGTACTCCGGCGCGATATCCTTATCAAAAGTGGCAGCCCGGCAGGTGGCGTGTCCGCCCCATGCCCGCCCCGCGTCTACCGTCTAGTCCGTCACTTCCAGGCACGCCCGGCTGCACCCGCCGCCCGCGCAGGGGATGGGGTAGTCGCCGTTGAAGCAGGCCAGGCAGTAGTTTTCGGGGTGGGACACGGAACGCAGCAGCCCGTCGATGGACAGGTAGTGCAGCGAATCCAGCCCGATGAAGCGCTCGATCTCGGCAATGGAATGGTTGGCCGCGATCAGTTCGCCCTTGGACGAAAAGTCGATGCCATAGAAGCACGGGTGCTTGATGGGCGGGCAGCTGACGCGGAAGTGCACTTCCTTGGCGCCCAGTTCGCGCAGTTTCTTCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.30,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 37110-33317 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIOTY010000004.1 Cupidesulfovibrio sp. SRB-5 SRB-5_scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 37109 32 100.0 33 ................................ GAAAATGAACCCGAAACCACCCCCAACGGTGAC 37044 32 100.0 34 ................................ CAGGCTGACCACCCGCTTGCGCCCGCCCCCCTTG 36978 32 100.0 33 ................................ AAAATCCTGGCGCGCTACCTCAAACAACTGCTG 36913 32 100.0 34 ................................ GCCCTTCCGGAGCGCCGGGGGCCGGGGCGCTGCC 36847 32 100.0 33 ................................ ACCGCGCTGCGGATCACCATCAGCGAGGTCACC 36782 32 100.0 35 ................................ GTCCAGCACCGGGTGGTCGATGTCGAAGAAGTACT 36715 32 100.0 33 ................................ TCCTTCGTGTTGCGGGCGTGGGGTTAGACGCGG 36650 32 100.0 36 ................................ TCATTCGGTGGGGGTTGCATCCTCCACCGGCACCAG 36582 32 100.0 34 ................................ ATATTGGCGGCCATGGCTAACCCCCGATTTCCTT 36516 32 100.0 34 ................................ CATGGCGGCCCGAGGGTCGAGGCTCACCCCGCCG 36450 32 100.0 34 ................................ CATCCCGGAGAGGCGCGTGTCCGTCCCGGCCAAC 36384 32 100.0 34 ................................ TTGAGCGGCAAGCCAAAGTCCAACAGCGCCACCG 36318 32 100.0 34 ................................ CGTTCCGTGAAAGTCATTGCGGGCTGTCATCATC 36252 32 100.0 34 ................................ CCCGCCCGCCAGCCGTCCCCCCCGCCCCCCGCAG 36186 32 100.0 36 ................................ AACCTCTTCCGGCACGGTGAAGACGATACCCCAGAA 36118 32 100.0 36 ................................ CCAGGGCGTAACGGCGGGCACATGACCGGTACCACA 36050 32 100.0 34 ................................ CACCATCGCGCCATGTCCGTGCGCGCCCAGGTGC 35984 32 100.0 33 ................................ TTGAGGCCGTCTATCAGTTTTCTTCTTTCCGCT 35919 32 100.0 34 ................................ CGCGTGTGGGCACTTGCGCAGGCCCGGCAGGGGC 35853 32 100.0 34 ................................ CCTTGCGGGCGTAGGGGGTAGCGAAGCGGCCCCC 35787 32 100.0 33 ................................ AAGTTCTATGCCACAGGCTTCCGCGTAAGCGGT 35722 32 100.0 34 ................................ CCGTTCTGGGAGCAGCCGCCGAAGCCATGGCGGC 35656 32 100.0 33 ................................ CTGTGGGGCAGGGCCATCCGGGACGCGGATGGA 35591 32 100.0 33 ................................ TGGCTGAACGGCATCCGCAGGGGCGACGTGCAG 35526 32 100.0 35 ................................ TGCAGTACCCGACCGCGCGGACACAATCCGCCGGG 35459 32 100.0 34 ................................ TTTTGCTGCCAAGACAACCGGACAAACCCAGACG 35393 32 100.0 34 ................................ GGCCACGCTTGGCCGTGCTCTTCCGCGCTCGATG 35327 32 100.0 36 ................................ CTTCACTCCGGAGTTCCACAGTTCGCTGTTACGGGC 35259 32 100.0 33 ................................ CACCTCGGCGGACGTGTCAATCACGGCCAGCGA 35194 32 100.0 34 ................................ GAGCGTGCGCAAGCAAACGACCCGTGGAAATGGG 35128 32 100.0 33 ................................ AGGAAAGGCGATAGTGCATCGGCTGCGAAGCCA 35063 32 100.0 33 ................................ TATTCGGACAATGCCGCAGAGCATGCGCCGGAG 34998 32 100.0 35 ................................ CGGCCACCTCGGGCGGGCCAGCGTCAGCATGACCG 34931 32 100.0 34 ................................ GTGGCCGTAGGGGTGAGGTAGTCATGCCGTTCAT 34865 32 100.0 34 ................................ ATCGTAGGTGCGGGTGGCCAAACGATGCTGTCTG 34799 32 100.0 34 ................................ CTGCGCGACGTGCTGGAAATCGTCAGCGGCACGC 34733 32 100.0 35 ................................ CTCGCAGATGAAGGGGCCGGACGGCATCAAGGCCG 34666 32 100.0 35 ................................ ATCTATCCCCATGTACTTGATGGTGATGGACGAAC 34599 32 100.0 33 ................................ CGCATCGCGGAATAACGAGAGGGGGCTTTTGGC 34534 32 100.0 33 ................................ ACGTGTGGAGGGGTGACGCATGACCATGATCGC 34469 32 100.0 34 ................................ CTTGTCCGTGGTAAACGAGCACAGGGCGTGCAGG 34403 32 100.0 34 ................................ GTGAGTGACCCGGTGTCTGTGGTGCAGGCCAGAG 34337 32 100.0 33 ................................ CGTCATCATCAACGTAGCTGACGGCACCAATCT 34272 32 100.0 33 ................................ ACGGTGCAGGAAAACAACCTGCTGCTCTACGAC 34207 32 100.0 35 ................................ AAGACGCGCGGCGGGTGGTACGACGAGCCGTGTAT 34140 32 100.0 33 ................................ CGCAGGGGCTTTCTCCGGAGCGACCGCCCTAGC 34075 32 100.0 33 ................................ GGGTTTGGTGCCGTTTTTTATTTGTTCGGCAAG 34010 32 100.0 33 ................................ TTCATCCAGCCGGATTTCTCCGGACTTCGGCAG 33945 32 100.0 35 ................................ TCGAAGGCGCGGGCCTCCGCCTCGTATTGCGTCGC 33878 32 100.0 35 ................................ CTGCTATCATGTACGCGCAAGATACCGGGGTGTTA 33811 32 100.0 33 ................................ TGGTGGGGCTGGCGTGCCAGCCCGTGTGGGTCT 33746 32 100.0 35 ................................ CAGCGGTTCGTCAAGGCGCTGCGCAGGTTCGGCTA 33679 32 100.0 35 ................................ TTCCACCGTCATATCGCTGCCGTGCGAAAGGGACG 33612 32 100.0 33 ................................ GGCGGCATCGAAATGCCCGCCCATGCCCCGCAG 33547 32 100.0 34 ................................ CCTACTCTGGTTGCGCGGCTTCTGCCGGTCTGGT 33481 32 100.0 35 ................................ TGGATGCCCAGTTGGCGCGATGCGGACCTGACCCT 33414 32 100.0 34 ................................ GCGCGGGAGGTGCTGCGCCGCCCCACCCTGACCC 33348 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 58 32 100.0 34 GTCGCCCCTCACGCAGGGGCGTGGATAGAAAC # Left flank : CCCCCGTTCTTGTGGAAATAGCCATGCTCATGCTCATTACCTACGACGTGAACACCGAAGACCGCGAAGGCAAAACCCGCCTGCGCCGGGTAGCCAAGCTCTGCCTGGACTACGGCCAGCGCGTGCAGCTTTCGGTATTCGAGTGCGAGGTGGACCCCGGCCAATGGGAAACCCTGCGCCATAAGCTTGTGTCCACCATCGCCCCGGAAAAGGACAGCCTGCGCTTCTACCGCCTTGGCCGCGACGGCAAGCGCCGGGTTGAACACGTGGGGATCAAGGAACCCGTGGACCTTGAAGGCCCCCTTGTGGTGTAGCGGCCATTGCCGCGCGAACCTGGGGCGTACGGATATTTCCCGGCAGGTTCGCGCGGGATAAAGCCTTAATGTGGAAGCAGGATACAACGCCACGCCTTCTGAAAGGCACGGACACTGTTCAAATGGCGCGAGGTTCGCGGATGCCATCCCCGTGATCCCCGCCCCGCATACGTTTTCAGGATGGCG # Right flank : CATGGCTACAAAATTGAACGCGTCGACTTCCAGGGTCGCCCCTCACCCGGGGTATAGAAACAAGAAGATAGCCGCCCGTAGACACGGGACGGCGACCGCGAGGCCCAACCACTATACGCGGCACAGCCTCTCACCGACAGCGACCCGCCGCCAGCGGGCGGAAGGCTTGGGATGGTCCGGCTGCACATCGATCCATAGGGCTGCGTGGCCTCCCGCAGCGTTGTGGGCGAGGAATCGGTGAACCTGTTCGCGGACACGGCCATGTGCACCGTGAAACGCAGGCGCCTTCCCCCCTGCGGGCGCGGCGGGCGCGACGTGGCCTGCGAGGTGGAGGCGCCGGAGGTGTTCAAGCTGCTTCGTTAAAGGGCAGGCGAACGCGCGCACGCCGGAGCCGGGAGTACCGCCCCCGTTGCCAGTGGCGCGCTTTCCGGTATGGTGGAACAAATCCCGCTTCAGGAGGCCGCCATGCCGCATGCCCGCCGCGTACCCCACGCAGAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCACGCAGGGGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //