Array 1 90409-94120 **** Predicted by CRISPRDetect 2.4 *** >NZ_POWX01000003.1 Neisseria mucosa strain C2008000159 C2008000159_S12_ctg_3081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 90409 32 100.0 33 ................................ GTCTTCCAATAGACTTACACGGACACCGTATTT 90474 32 96.9 33 G............................... GCCACCATCCTCTTTGACACGATCCGAAATGCG 90539 32 100.0 32 ................................ TTGCATTGTGTCGCTGTATCGTTCATAATCGC 90603 32 100.0 32 ................................ GCTTTGTCGTAGATACGGCAATAACAAGATGA 90667 32 96.9 33 A............................... TGATAGATGAAGTAGCGGAAAGAGTAGATATAG 90732 32 96.9 33 A............................... ATCTTTATAAATAGGCTCAAGACCCCACACAAA 90797 32 96.9 32 T............................... AGCTATAGGTTTTGTATGACGAGATGTATATC 90861 32 100.0 34 ................................ TTGTACGTCCTGATCAACTCGGAACGGAAGAAGA 90927 32 96.9 35 A............................... CTTGAGACGAATAGCAGGAACAACCCGATTTTCCG 90994 32 100.0 38 ................................ TCAAAGTAAACGAAGCCATCAAACGCGCACACATCGGC 91064 32 96.9 40 G............................... TCAAAGGGTCGGTTCGATCATCAGCGTGCCGGCAACGGGG 91136 32 96.9 34 A............................... TCAAAGAGAACGAAGAAGAAACTAATGAATCGAT 91202 32 96.9 32 G............................... TCTGGAAAATGCCATCCGTCGCGATATAGCCG 91266 32 96.9 33 T............................... CGAATGGCACAGTAGTAACCCTCGGCCCTGCAA 91331 32 100.0 33 ................................ ATAAAAAAATGAGGATCCATCATAGCCCCTACC 91396 32 96.9 34 T............................... TGGATACGGCGCGACTTACCAAACAGAACAAGGA 91462 32 100.0 34 ................................ GTGTAGCGGGATAAGCGGCTCAGCGCCAATTCCA 91528 32 96.9 33 T............................... ATTGCTTCAGGAATCCCCGCCAATCCGAGCAAT 91593 32 100.0 34 ................................ AGCCATATCCTTATAGGTTTTAATCTCACGTTCG 91659 32 96.9 34 G............................... TTTCGTGGAATGAAAAGCTGATTTGGTCGATAAA 91725 32 96.9 34 G............................... TGTTTCGCCGTTGAAAACACGCTCAAGCGCATCG 91791 32 100.0 32 ................................ CAAAGTCGGCGGTTTTGCTCGACGCTCCGTTT 91855 32 96.9 38 G............................... CAAAGCGCGATCAGCTTGTCGTATTTGCGCGCCGCCGT 91925 32 100.0 33 ................................ CAAAGAGTCCAACACCGACCGCTCCACAGCACG 91990 32 96.9 33 G............................... ACATTACCGCGCGACTCCTGCATCGACAATGCA 92055 32 96.9 33 G............................... CTGAAGGGCATGACATTAAAGATATGAATGTTT 92120 32 96.9 33 G............................... AAGTGCTACGAGCGTTTGGCTTTGGCTGTTTAC 92185 32 100.0 33 ................................ TTCTTCGAAATTCCCATAATCTGTAATGTATAA 92250 32 96.9 32 A............................... AGGCGGAGTGCCGTTATAAAGCTTACGGAAAA 92314 32 100.0 33 ................................ CATCGAATTGATACGGCCATGCAAGCGGCCAAA 92379 32 100.0 34 ................................ AGAATAATTCTGTTGTCTGCGGTTGATTTCCTGA 92445 32 100.0 34 ................................ ACGCTGGGAAGTCCGATATAAATCTACCAAAGTC 92511 32 96.9 33 G............................... ATGATAACCGCCTTCAAATTCTTCGGCAGAATA 92576 32 96.9 33 A............................... ATAGACATTCTGGCATTGATATTATTTTGATAA 92641 32 100.0 32 ................................ TTTTTCGGGCAATTCGTCGCATGCCAAAATGT 92705 32 93.8 34 T.....A......................... GGCTTGCTTCGCTTCAACCGGTTCTACCGCTTCG 92771 32 96.9 33 G............................... CCGTGCCTGAGTACGCACTTAAATCGATGACCT 92836 32 96.9 35 T............................... ACACTGGACATTACCGCAATCGGCGATATGGACTT 92903 32 96.9 34 G............................... CGCCCAAATCGTTTATGCATATAGGGTTGTTAAA 92969 32 100.0 35 ................................ AGTTCAGTATGATGAGACGACACCGCACTTGCAGG 93036 32 100.0 33 ................................ GCCTAACGGCGTACCATACAAACCACAGACTAA 93101 32 100.0 34 ................................ GATTTGTTTTTCCATCGCCTGACGCTGACCTGCA 93167 32 96.9 35 A............................... TCTTCGATGGCAGCGGTGCCATCTACCATAGCATT 93234 32 96.9 33 G............................... CTTTTGACGGAGGTCTTTATAAAGTACGCTTCG 93299 32 96.9 35 T............................... CGGCAGGAAAACGCGATTGAATGGCAGCGTTTGCA 93366 32 96.9 33 G............................... CCCAATCTTGATGTGGAACAGTTTGCCAAAGTA 93431 32 96.9 34 T............................... GCACGTCATCGCGACGGCTGACTTTATCCCAAAA 93497 32 96.9 33 T............................... TCCACCGCCGCCCATCACGCCCTTACTCTCGCC 93562 32 100.0 35 ................................ AAAGGCATATTTAAGCCATTGAATAGACTTGCTCA 93629 32 96.9 32 T............................... CACAAGATCCGATCCGTGATGTCTTGGCCGCG 93693 32 96.9 32 T............................... CAAAAAAACCGGTCTGGCAACGGTAGGAGGGT 93757 32 100.0 33 ................................ TGGCGTGACAACAACAACACAGAGACTGTATTG 93822 32 100.0 37 ................................ AGGCTTGCTTTGTGCTTCCTGATGAGTTGTATTATAC 93891 32 100.0 36 ................................ ACAAATTGGAGACCAAGAAAACAAATGTCGTCCAAA 93959 32 93.8 33 .........C..G................... CATAGATATGATAGTGATTTTATAGAAATTCAG 94024 32 96.9 33 ............G................... AGACGACCTCTACCGTACTGGCGATTGATTTTG 94089 32 93.8 0 .................A...C.......... | ========== ====== ====== ====== ================================ ======================================== ================== 57 32 97.9 34 CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCAGAAGGACAGGCAAGGCTGCGGCGCGTGGCAAAATTGTGTCTGGACTACGGCGTGCGCGTGCAATATTCGGTGTTCGAATGCGACATTGCGCCCGACCAGTGGGTTGTTTTAAAGGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGTGCAAAGTGGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTACGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGGGAGCTTAGCGAACTCGGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : CCCTTAGCCGAGGGAGCAGATGTAGAGGCGCAGGCCCAGCCGTCTTCAGCTAACCATATATCGAAGCCGGACGGTGCTTTCCTGATTTAAACCGTCTGTAACCATCTGCTTTTTGATGGTTATCTCTGAAAAATTATCTTTGGAATAGGAAATCGTTAATCCATCAAATCTCTGTCTTTCAGACGATTGAAATCGGATTTGTTCTATTCTGATTAAATCGGATTTTTCCAGCTTCGGGCTGCCGGATAAATTTGATGCAATGCAGGGTTTGATTGGCAAGGGGCTGGATAAAAATGGCAGCTTTGTTATAATAAAACTACTGGCAGTTACATACTTTTCTTGGCATTGCGCCGTTTTATTCATATTAACGAAAGAGGAAAACAAAATGTTTCCAGAATATCGCGATTTAATTTCCAAATTAAAACAAGAAGACGCTCACTTCGCCCGTCTGTTTGACGAGCATAATGAGTTGGACGATAAGATTACAGGTTTGGTTAATA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //