Array 1 222907-221053 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVU010000002.1 Listeria booriae strain FSL L7-0605 NODE_2_length_592276_cov_64.130384, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 222906 30 100.0 35 .............................. TCACAACAAACGACTTAGGTGATGTTGGGAAGAAA 222841 30 100.0 38 .............................. AGATCATGTTGGCTTGAACCACAACAAAGATACGATTA 222773 30 100.0 35 .............................. CAATAATAGATGCCTCCTCCGTTGGTGTTGCTTGC 222708 30 100.0 36 .............................. TTGATTCGTGCGTTAATAAGATTGCGAATGCGCTTT 222642 30 100.0 36 .............................. AACGACATCCCTGTGATGGCGCCTACGGAGTTAGCT 222576 30 100.0 36 .............................. ACGCCAGATATAAGCCTGTTATTTTCTAGCCTGAAC 222510 30 100.0 36 .............................. AGTTGAGTACGAAAAATACATTGCTTATGAGAATGC 222444 30 100.0 36 .............................. AAGCATCGGCAACAGCTTTCACATCTACTTTTACTT 222378 30 100.0 34 .............................. CATTGAAGTTAACGCCAGCACCTTTTGCGCCGTT 222314 30 100.0 35 .............................. TTATCCAAAGTACTGGTGTCAGTGCAGTAAATGAC 222249 30 100.0 36 .............................. TCGATAATATCATCATTGGCGAACTTGACGATTTCG 222183 30 100.0 37 .............................. TTCAATTCCTTGTTGATATGAGTTGCGAATCAGAAAG 222116 30 100.0 35 .............................. TTCATCATCCCAAGTAGAGTGAGGCATTTTTACAT 222051 30 100.0 37 .............................. TCCAGTCAATTAATGCTGGAATTACTGGTATTGTGTC 221984 30 100.0 35 .............................. CTAACATGGAAGAGTTAGTGCATAAAGAGGATCAT 221919 30 100.0 37 .............................. ACGATTACGTTTCAGAGTGGTACATCATGTTAGGGCG 221852 30 100.0 36 .............................. GAAGAAGCCTTGTCAGCCATCGAATTGATGCCATTG 221786 30 100.0 35 .............................. AGATTAAAGGTAGAGGGATTATACCCGGCTTTGCT 221721 30 100.0 36 .............................. TCGTTTGTATTGCCGCCTCACCTTGCACACGCGCGT 221655 30 100.0 36 .............................. AAATTCGTTAGACGAGTTGTAGGAAAAGATGAGGTG 221589 30 100.0 34 .............................. CAACAATCACCACCGCGGGAAATAGTAGGAACGC 221525 30 100.0 36 .............................. GCACCAGCGTTAGTTGTGGTGTCACAGTGGTTCGAT 221459 30 100.0 34 .............................. ACGATTGCCCAGCGTCGGAGCTTATTCCAGCCAA 221395 30 96.7 35 .................G............ GCAACATAATGCGAAACGTGATACGTAAAGACTTC 221330 30 96.7 34 .................G............ ACAAGTAATGATTTGTAGTTGATTTGGTCGATCA 221266 30 100.0 36 .............................. TCGTCATTTGTTTCAAATTCTGTAATCGTTGTTGGT 221200 30 76.7 22 .................G...C..A.GTCG TCGTTGGCATGATTGAATTAAT Deletion [221149] 221148 30 90.0 36 A............C...G............ AATGACAAAGGCCAAACGGTACACTTTACAAACCCG 221082 30 80.0 0 A......C.C.....C.......CA..... | ========== ====== ====== ====== ============================== ====================================== ================== 29 30 97.9 35 GTTTTTATCTAAGTAATATGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTGATTTACGACATAGCAATGGACAACGGCGGCCCGAAAGTATCGAGAAATATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACGCCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGATATGCAAGGGGTTGATCCTGTTTTTGGTGATTGGCTTGTAAGGTTTGAGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CAATCTGTTTAGCTACGATTGTTTTGGCAGACAATCTCTGTCTACCAAACAATGTTCGTAACCAGTATACGCTACTTTCAAGCTCTCATAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCGGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGACCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCAATCTCCCCAATGTCGCGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 334511-335008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVU010000002.1 Listeria booriae strain FSL L7-0605 NODE_2_length_592276_cov_64.130384, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 334511 36 100.0 30 .................................... GTAGAGGAGTCTAGAATCACGTTCGACGGC 334577 36 100.0 30 .................................... TATACAATACCAATTAAAGATTTAAAACGT 334643 36 100.0 30 .................................... CGGTAGAGCGTTTAGGTCGATTTACAGCAG 334709 36 100.0 30 .................................... ATAGTTTAGTAGCTCAACTGCGTTCTCACT 334775 36 100.0 30 .................................... AGTAGGCAAAGAGGTTATGATTAGTACAGA 334841 36 100.0 30 .................................... AATTAAATTTGAAGGTTGGAATTTAGTCAT 334907 36 100.0 30 .................................... GGTTGCACAAATTAAAAGAGAGTTGCATGT 334973 36 86.1 0 ..........................GT.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 98.3 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : CTGTACAGCTATCCCCATATCAAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATAATTTCTTCGCCTTGAAGTGTGATAGGTAACGCCTTGCTACCATCTTTCTTCAATAAACGCATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAGTCTTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGATAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTTGAGGAAGAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCGAAACTAAAACAGGTTACATCACTGTTTTAGCAAATAAATACTGCATCATTGACTACTAATCGGATGAGCATCACTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTATCCCACTTATCCACAGTAGAG # Right flank : CTTTAATCTTTGTAATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAGCATCTTCACAATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTATCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATTACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGATCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATTTTTTGGTGATAAATAATTTAAATGCGCTATACGATTTCTGTCATTTCTCTTAGAAACAAACAAGTTCTCCCCTACCATGAATTTATGAAGTTTTTCAATATGTTTTGGCCATGTTTTCCTGCGTATTTTTTCCCAATATTTTTCAGTAGTATTAATCCAGCTATCCA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 338483-338915 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVU010000002.1 Listeria booriae strain FSL L7-0605 NODE_2_length_592276_cov_64.130384, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 338483 36 97.2 30 ...................................A TCCATTGCATACTTATAATGCAACTAGTTC 338549 36 97.2 30 ...........................T........ CGTTTGAAAAAAATCCTGATCGTCCTTTTG 338615 36 97.2 30 ...........................T........ CGGAGTTCCAGTATATTCGGCCTGATGATG 338681 36 100.0 30 .................................... ATGTTCCCTCGAGATCCATCACTTTCGCCA 338747 36 100.0 30 .................................... ATGCTTTACAGCGCAATGGGTTTGAGCGTC 338813 36 97.2 30 .........A.......................... TGTCGATGTACAAAAAACGCGAAATCAGCG 338879 36 86.1 0 ..........................TG.A..C..A | A [338908] ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.4 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : TTAATACCGCTGACATTAATTCTGTTATTTCTTTATTGATTGCTTTGTTGATTGCTATTTTACGTTTATCTTTTTCTTTTTTGTTGGGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATAAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCAACTCTCATTTTGGTGATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACTTTCATATGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATCCATTGGCAATTACCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : ATCTATTTTACTTTCAACAGTTTAACTATACCAAATTATTAGTAACTCTGCATCTTCGCGTAATCACACGTACTAAGTAACTGTATTTGGCTATAATTATGGCTTTTATAATACGAAACGTATTCATCAATCTTTACACCAAACGATTTTGAAAGAAAAACGAATTAAATTCTATTTATTTTTGTCCAAGATATTGACACCACATCAATATCGCCAATCGTTCACTTTACTCATCTAATCATATCTAAAAAGGATAGGAAGTCTTTTGCAATCCAATAAGTATTTTCTTCATCGGTTGATTCTTCAAACTGAAATGCGTCATCCCAATAATAGATACCTTCAAATTCTCCCTCGCAAATCATTACAATCATTCCTTGCATGAGATCATCGCCAATAATTATTGAACCTTCCATCATATCTTCTTTTAGTTTTTCCATCCACGTCTCTATGTTAGAGGCACTTTCCCCAGTATTAACACCATATAATACATCAATATTAAT # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTATTCTAAATC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 68803-69355 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVU010000011.1 Listeria booriae strain FSL L7-0605 NODE_11_length_116806_cov_54.701968, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 68803 30 100.0 35 .............................. CGTTACATTACGTAACGCATAGCCAAATGTCACAT 68868 30 100.0 36 .............................. TCATCAGGAGGAACTTTTGGCCCGAGGTTTGGCTCT 68934 30 100.0 36 .............................. GTGATTGTACCTTCCAGCATTTCCGGCTTACTAATC 69000 30 100.0 36 .............................. TATAGTGCTGCGTTGTCTATTGACTTTGTGAGCTCT 69066 30 100.0 34 .............................. CCATGCTAGCACAGATAGTGACTCCGTAGTTGTC 69130 30 100.0 35 .............................. GAAGAAAACAACCAACCCGAATTTGATTCTTCTGA 69195 30 100.0 35 .............................. GGCGATATGAAGTTCCCGATGATCCACGAATAATC 69260 30 100.0 36 .............................. AAAAGATGCTCAAAACGCGCAAAAAGAATATGCCGA 69326 30 80.0 0 .............C...A.....CA...TC | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 97.8 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCAGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATTGTTCTAATTGCTGTCGGATTCGCCGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGCTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAAGGGGTAGGATGATTTTCGAGGAGGCGAAAAAAATAAGTAGATCCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCCAAATAAGGAGGGACACCAAATGACAATGGAAAAAGTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAGGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACGCATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAATGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACGTTATAAACGCTCATCTTCTCCTGAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAATTACGAGAAC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 72603-74016 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVU010000011.1 Listeria booriae strain FSL L7-0605 NODE_11_length_116806_cov_54.701968, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 72603 30 100.0 36 .............................. CATTAAAAAAAAGGAGACGATATGGCATGGCTACCG 72669 30 100.0 36 .............................. ACGGGAGCAGTTAACGCGTTACTAGCTAACGCAGTA 72735 30 100.0 34 .............................. TCTTCTGACCTTCCACTAATCCCTTATGCACGGC 72799 30 100.0 36 .............................. CAACGTCCTTATCCGCCCACGAAGGCTTAGCATAGA 72865 30 100.0 37 .............................. CGGTTCTGTTTTTGTAGGATCAACACCAGATACTCGC 72932 30 100.0 36 .............................. CCTTCATCGTCATAATAGGCTGTTTGGTCAACCTCT 72998 30 100.0 35 .............................. TCACTAACACCTTATATGCAATCTGAATCTTCTCT 73063 30 100.0 36 .............................. AATTGTACTTGCGCCAGTTGGCCGGACAATACAACC 73129 30 100.0 37 .............................. GGGATTTGGTAGGAACATATGGCTCCTTGTTTAATGG 73196 30 100.0 36 .............................. TCCAAATACGACAGTCGCCCGCGACTTAGTCGAAAG 73262 30 100.0 35 .............................. TCACCTTCGGCTAGTTCGCCAATTTGATTAGTCTT 73327 30 100.0 35 .............................. AAGACCAAGAAAGGATGAGGAGTAATGACTTATTA 73392 30 100.0 37 .............................. CTGCTAACCCCCTCACCTAAGATACCAGGCAACTACA 73459 30 100.0 36 .............................. TAACTGTCATACAGCCCATCAATCGTTGTTCGAATC 73525 30 100.0 34 .............................. TTCTCCGGAAACAGGTCGACGGGTTGGGTATTCC 73589 30 100.0 34 .............................. TCGGATAGAACGTTTCGACAACACCACTACTATT 73653 30 100.0 37 .............................. ACCCAACTAACCGAAGAACACGGCAAGAAGCTGTACA 73720 30 96.7 37 .............C................ GTATTTTGCCATGCTAATATTCCATCATCGTTTTTAA 73787 30 96.7 35 .............C................ TGGACTGAGACGCGAGCGCGCCAAATCCATTTATT 73852 30 96.7 36 ........T..................... GTAAGCGAGGCATACTTTTCAGAGTTGCAAAACAGT 73918 30 100.0 37 .............................. ACGTCTGTCTCTGTTAAATTGAATGCCAACACATCGG 73985 30 76.7 0 ............C..GA..T...C....TA | G,G [74000,74009] ========== ====== ====== ====== ============================== ===================================== ================== 22 30 98.5 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAACCTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGTTTTGAAGTGCTGGATAAAGAACGCCTTGTTCAGAAAACAACATTTGGCGCGAACCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTCGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCATTGATTGTGCAAGACGGGAAGAAAAAGATAATTTCTACAGATAATCTTGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGTATTGGTACTAAAGAGGTTAGGCCTATTTTCGGAGTTTGGGTTGTAAGATTTGAGGGCGATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : AATGCAAAGTGAATAACAAGAGGGTGAATATCCATTACTACTAAACAATGGATATCCACCCTCTTATCTATGCCTCATATGTTGAACATTTTTAGCATGCAATTAACAACAATTATCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACAGGAATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCGAGCGTGGTGATAGAACCGGTTCCTGCTATCTGATTGGAAAGGGGAACCGTTTTTGTATCCAGTATTCTACCATTGGTATCATATGCAGTTAGTGTGATAGTGTCCGTATTTTTTAAAATCACTCGTTTTGCATAATACTTAAAATCTGGTGAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 193632-194772 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVU010000004.1 Listeria booriae strain FSL L7-0605 NODE_4_length_280447_cov_62.986222, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 193632 30 100.0 35 .............................. TTTGGAATGCTTCAATTGAAAGCATAAAAAATGCG 193697 30 100.0 35 .............................. TGATAAAGGCGAACTGACCCGCTTTTTTTCTTTTC 193762 30 100.0 36 .............................. TTCAATGACTCATCTTCAACCACCAGTGTTATTTTT 193828 30 100.0 36 .............................. CAAATCCGGTCGTGTATCAATTTTCTTTTCTCGTCT 193894 30 100.0 32 .............................. TATCGTGTTTTGGTTGTTAATTTAATAGGGAA 193956 30 100.0 36 .............................. AGTGCAGTCGAGATACTAGCTCAAGAAAGCGCAGAC 194022 30 100.0 35 .............................. ATGAGATTCTTTTGCTTTTTCCATTTTGTAAATTC 194087 30 100.0 36 .............................. CATAAATCAGTGTTTTTACTAACAAAATCAGAATCC 194153 30 100.0 35 .............................. GTTGATTTCATGTACACATTTACGCATATACACAT 194218 30 100.0 35 .............................. ACAATTACCTAAGAAAAAGGCAAATGGTTTTCTAC 194283 30 100.0 36 .............................. CATTGATGGTTTGCATTTGCACCTGCAATATCAACA 194349 30 100.0 36 .............................. ATTCGCGATTAAATTAGGCGCATTGACAACATCCGT 194415 30 100.0 35 .............................. CCCTTCAAGCTGTCATCCGTTGCTTTAGCTAAATC 194480 30 100.0 35 .............................. GTTGTACCTGCAAAACTTAGCTTCCCTGCACCCAG 194545 30 100.0 37 .............................. AAATTTCGCGCAGTAAAAACGCGTATAAGGGGGTGTA 194612 30 100.0 36 .............................. TTTTTTTAAAAAGTCACCTAGCCCGTCAAAGTTATT 194678 30 96.7 35 ....C......................... GTGTATTCAATTGCCAAATTTTGTTCCTCCTAATT 194743 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ===================================== ================== 18 30 99.6 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGCAAAAGGAGATGGTTGATAAGTGGTGTTTGGAAAGGCGGGGATAAAAATCTGTCGACCGTCGGTAGTGTGGAATTTAGGGGGCATCGACAGATTTTTGTTAAGCATTGGTGTGCAAGGGATTGAGTCTATTTTTGAAGTTCGGACTGTAAGGTTAGAGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTATGCATTGATGGGGTACCT # Right flank : TCAGACAGATGCGGCATGGGCGGAGTTTGACAGATTGTCTTTATCTAAATAATATGAATCCAGACTAGATTGCCCACAGAAGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTACGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGAGCGATCTGGCATGAGACACCGCAGGATTTGGCACCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGAC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //