Array 1 126592-128197 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP021951.1 Klebsiella quasipneumoniae strain WP3-W18-CRE-02 plasmid pWP3-W18-CRE-02_1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126592 29 82.8 32 AGTA.T....................... TCCGGATGATGACATTTCGGGTGATAATCATA 126653 28 96.6 33 ..........-.................. GGGGCCAGCTCCCGGACGAGAAATGTGACGCCC 126714 28 96.6 32 ..........-.................. ATTCCGTTCATAATTTTGTAGCTGCCCGCTAT 126774 29 100.0 32 ............................. TTCTCTCCGCCGGGCAGTGTGATGCCGGAGGG 126835 29 100.0 32 ............................. GCAGCGGCCTGACGATGATCGATATGAACGGC 126896 29 93.1 32 .............A...A........... TGAAATTGACGAGTGGATCAATCAGCGTATTG 126957 28 89.7 32 ..........-.TA............... TCACTTTTGCGTCGAGCCAAGTTATTATCTCA 127017 29 93.1 32 ............TG............... TAATTTAGGAAATGAATTCTAAAATTGAATCT 127078 28 93.1 32 ..........-..A............... TGAGGCTGCTGACGGAGAATTGGGACCTGTTC 127138 29 100.0 32 ............................. TAAGCTGATCGTTGCCGTAATGCGAAGCGGGA 127199 29 96.6 32 ...............T............. TGACTTTTGTGAAATTTTTTTCTTAAAAAACT 127260 28 82.8 31 ..........A..AC.T....-....... TTAATGTTTTGTTAATTTATAAGTGTGGTGA 127320 29 93.1 32 .........T...C............... CGTTCGGCTAGGGCGTTGACGGACGCATTTTC 127381 28 86.2 32 ...C......-..AC.............. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 127441 29 100.0 32 ............................. AACAGTGGGATTTCACCTTTTAGGTTGAGTCA 127502 29 93.1 32 ............TA............... TCACTTTTGCGTCGAGCCAAGTTATTATCTCA 127563 28 93.1 32 ..........-..A............... GCCATGCAACGTCTGAACGTCCGAAACATCCC 127623 29 96.6 32 .............A............... AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 127684 29 96.6 32 .............A............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 127745 29 100.0 32 ............................. TCGAAGGCAACCACCAGGAACAATAAAACCCC 127806 29 89.7 32 .A..........TG............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 127867 28 89.7 31 ..........-..G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 127926 29 93.1 32 .............A............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 127987 29 93.1 32 ............TC............... TTACGCATTGTGATCAGGATTCGCTTCAGACG 128048 29 93.1 32 ............TA............... TCGCCCAGTCCAAAGGGGATGATGCAGGATTG 128109 29 100.0 32 ............................. GGCATGAGCGCGAACCACTGCGAGAGTGTGGT 128170 28 86.2 0 ..........A..A.........-....A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 93.6 32 GTATTCCCCCCGCTTGCGGGGGTTATCGG # Left flank : TGATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTACGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTACATTAATCCGCTTTGCAGCCGAGCCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTGAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCGGGTGGATTTTAGTGGTGCTATTTATTATTTTATAATCAACCGGTTATTTTTAG # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGCTAGCGTTAAAGGAACATTTAGCCGTGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTATTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACATGATCGGCTTTTCCGTCACATTCATTCAGCTCAGCACCAAAATCACCGCAAACTTCACCTGCATACTGATTTACTTTTTCCAGATGTAACTCACCGAAAA # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.30, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCTTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [14-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //