Array 1 162974-162334 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYED01000001.1 Salmonella enterica subsp. enterica serovar Newport str. WA_14885 SEEN4885_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162973 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 162912 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 162851 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 162790 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 162729 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 162668 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 162607 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 162546 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 162485 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 162424 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 162363 29 100.0 0 ............................. | A [162336] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGACACAGTCGTCCCGCGCAGCGGGATAAACCGAACAGTGGTTTAGGTTGTCGGTGCTGATCC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 823-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYED01000044.1 Salmonella enterica subsp. enterica serovar Newport str. WA_14885 SEEN4885_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 822 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 761 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 700 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 639 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 578 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 517 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 456 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 395 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 334 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 273 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 212 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 151 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 90 29 100.0 33 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAAA 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : C # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18678-17492 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYED01000044.1 Salmonella enterica subsp. enterica serovar Newport str. WA_14885 SEEN4885_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18677 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 18616 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 18555 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 18494 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 18433 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 18372 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 18311 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 18250 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 18189 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 18128 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 18067 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 18006 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 17945 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 17884 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 17823 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 17762 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 17701 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 17640 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 17579 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 17519 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //