Array 1 399845-400988 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV807546.1 Neisseria sp. HMSC067H04 Scaffold172, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 399845 33 100.0 31 ................................. TCATTTTCATTTGGAATTTGGGCTTCTTATC 399909 33 93.9 32 GA............................... AGAACGTGATTGTTGATATTCAGCCTGTGCTG 399974 33 93.9 32 AA............................... ATGGTCTTTCTTCTGTTCTTTCGGGGCTTCCG 400039 33 97.0 33 C................................ TTGCCCAACCGTCCACGCCGACAACGGGCGTAA 400105 33 97.0 33 .A............................... TCGGGGTGTTTGTACTGCCGATGACTGCCTCGG 400171 33 97.0 33 G................................ GGGAAGAGAAAGAAAGGATTCGATATGTGCAAG 400237 33 100.0 34 ................................. ACCATTGGTTTGCCAGTTCGTCGATTTTGCTTAC 400304 33 97.0 32 .C............................... ACTGGGGATATTTATCATATTGATGGTGCAGA 400369 33 97.0 33 A................................ TTGAGAAACGTCATCCACCTGTTCTCTAATGCA 400435 33 93.9 32 GG............................... GTCAAATCAGGCTTAAAGTAGCCTTCCGCTTT 400500 33 93.9 31 GG............................... TTGTTGTGTTTCGCGGTTGTATTCTTTAACC 400564 33 97.0 33 .G............................... ACGCTTCGCCTCTTCGACGCTGTCAGCAAATAC 400630 33 93.9 33 GG............................... AAGCCCCAGAAACGCCTAAAGAAGTAAAAGCAG 400696 33 93.9 33 AC............................... GCCAAACTATCACAATAAGCGAACGTGGTTCAA 400762 33 93.9 32 AC............................... AGGCGATTGCCGAAGAATACTTTGCGACCAAG 400827 33 93.9 32 AC............................... CATCCCGTCAAATTGCGGATGGCTATTGATAA 400892 33 100.0 31 ................................. CCATTGACATCAATCCTTTCGATTGTGTGAT 400956 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 18 33 96.3 32 TTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGAAACATGAACCCTGTCGAATTGGCGGCCAATACGTTCAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCCTGTACGTTTTCAAAAGTGGCTTTTCGGTACTGGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCCGTTATCGTCGCCAGCGGTGGCAGAATCGCCTTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCCATGCCCGAATCTGCCTAAACTTGAGGGCGGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGCCGGTGGGCTGGGCATTTTTCGGGATAGGTTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGCGTATGGCCGTCAAAAGCTCGCAAAATG # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGGTCGGCTCTACTTGCCAGCGTTGAGATAAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACATTTACCGCCTAGATAGGCGGTTTTCTTTTGTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAGACATAAGGCCATGCGGTCGGAGGTGTCTTTGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCGCCAAGGGTACTCACGTTATGAGTACCCTTTTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCATTTTGTTGGCAGGTATTCTCCAAATTCCTGACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATATCAATTTCCGCTTCAAACGGTAAAGGGATACAGCCG # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 401089-401577 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV807546.1 Neisseria sp. HMSC067H04 Scaffold172, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 401089 33 100.0 32 ................................. GGGTCGGCTCTACTTGCCAGCGTTGAGATAAA 401154 33 97.0 32 G................................ ACATTTACCGCCTAGATAGGCGGTTTTCTTTT 401219 33 93.9 32 GT............................... AAGACATAAGGCCATGCGGTCGGAGGTGTCTT 401284 33 93.9 32 TG............................... CCGCCAAGGGTACTCACGTTATGAGTACCCTT 401349 33 93.9 33 TT............................... TTCATTTTGTTGGCAGGTATTCTCCAAATTCCT 401415 33 93.9 32 GA............................... AATATCAATTTCCGCTTCAAACGGTAAAGGGA 401480 33 93.9 32 TA............................... TTTTGCTTTGTCATATACTCGCGCATAACATG 401545 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 8 33 95.8 32 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GTTGAAACACGCTTCGCCTCTTCGACGCTGTCAGCAAATACGGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAGCCCCAGAAACGCCTAAAGAAGTAAAAGCAGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCCAAACTATCACAATAAGCGAACGTGGTTCAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGGCGATTGCCGAAGAATACTTTGCGACCAAGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATCCCGTCAAATTGCGGATGGCTATTGATAATTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCATTGACATCAATCCTTTCGATTGTGTGATTTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCCATTCCCCAATCGGGGCGGCTTGTTTCGTAACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTGATTCTCGCTTCCCAATTTCAGACGGCCTGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTGCCGTCTGCTTTGCTTTGCACTGTCGTGATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCTTTGAAACAAATTAATTTCGAATTAAAACAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCC # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 402394-402628 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV807546.1 Neisseria sp. HMSC067H04 Scaffold172, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 402394 33 97.0 33 N................................ CAATCGCCACGCAACATCATGACATTGCCCACG 402460 33 100.0 37 ................................. GCAGTGTTTTGGCCGTGTCAGCAATCACTATCGCGGC 402530 33 100.0 33 ................................. CAGCAAAACCCTCTACTCGCTGCCTTTACCGGC 402596 33 97.0 0 C................................ | ========== ====== ====== ====== ================================= ===================================== ================== 4 33 98.5 35 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GTGTTGAAACCCTTTGAAACAAATTAATTTCGAATTAAAACAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCCGTCGCCTCTTGGTTTTTGATGTAACCAATCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGCGTCCTGCGTTCTTTTTGAGAATTAGCGCGTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCTAAATCGGGCTTAAAGTAGCCGTCTGCCTTGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CTCTGCCACCGTATCTCATGTCTAAGTAAGGAAGAGGGGCTGTATGTTCAAATATTGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCTGTGAAGGATATTAGAAGCAAGTCATAAAGGGTAATCAATAACAATGCTGTCTGAAAAAGTTTCAGACAGCATTTTTTCTATTTGCATATTAAATTTAATATCATATTATCATTGCATAATATCAGTTTAAATTTTTTAGAATTTCAATATGAAAACCCTAATTTACTACGCCCATTCTGCCCAAGACAAACTCGGTAATCTCTTGCCTTACGAACATTGGCAAACCTTACAAAGCCATTTGGTCAATGTTGGGAAAATGGCGGTGGAGTTTGCTCGGGTATTCGGTGCCTGCCATACTGGACAGCTTCATGACTAAGGGAAATATTCGGAAGCCTTTAACCGCCAATTACATGGCAGCCCTTTAGTCGATCAAGCTATCGCCGGAGC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //