Array 1 75880-76175 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIFO010000007.1 Bacillus altitudinis strain B1S54.2_3W19 Sample002_(paired)_trimmed_(paired)_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 75880 32 96.9 33 ...........T.................... ATTTTCTGTTCTTGCTCGGCGCGCATTTCCAAT 75945 32 100.0 36 ................................ TTTGGCGTAAGCCTCTAATGCTGATAAGTTGTCTTG 76013 32 100.0 34 ................................ CAACAAATCCGTACATTAAACCATTTCCCCTTCC 76079 32 100.0 33 ................................ AGCAACATCATGTTTAGATTGTTGTACATCACT 76144 32 84.4 0 .............A.......C.AT..T.... | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 96.3 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : AATGAAAGAAATAGCCGACCGGCTAGGCGAAACGAGACAAAACATCTCAAACATCCACAAAAAAGCACTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGCAAGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAGTAGACCGGCTGATTTACCAAGAAGGACCTGGATTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGGAACTGAAGGTGCGAATGTCAGGTGAACATAAAATCCCCGGTGCATTCGCACCTTTTCATTCGATAAAATTGAGAAAAAATGTATATTTCATGAAGGGAAAAACAAAATTCTTTATTGAAAGTTGTGGATTGTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGC # Right flank : TGATTGTCTCTTAAACGGGTATGGCCACCTCAAATCCATCTTCTTACAATATCCTTTTTCAAATAGCCATCAAATATACTGTTCATTTGTACAGTGAAGACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAATGTGGTGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACCGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCCGAAGAAGTCGACTTTGCTTCTAATCATGGTGGGCTGACAGGGGATTCTAGAGAAGTGATGTGGATGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTTTTTGATGAGCAGTAT # Questionable array : NO Score: 8.87 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 84690-84854 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIFO010000007.1 Bacillus altitudinis strain B1S54.2_3W19 Sample002_(paired)_trimmed_(paired)_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 84690 32 100.0 35 ................................ AAGCCCTAGAACACCGCCGTATACTGCACCTTTGA 84757 32 100.0 33 ................................ AATTCTGTTTGAATAATCAATTCTTGTTTAGTT 84822 32 87.5 0 ...........C.......T..A....A.... | T [84851] ========== ====== ====== ====== ================================ =================================== ================== 3 32 95.8 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CGCACTCTATATGAGTGTGTGGATTGAAATCTCTACTTCAAGAGCTGAGTGTTGTAAATTCTGGGTTGCACTCTACATGAGTACGTGGATTGAAATTTATGTATTTCCACTACTGTTCCTTCCCCATATAAGTCGCACTTAACATAAGTGCGTGGATTGAAATAATTCCCTCCATCCATGACAATTTTTTGGCTTAGTCGCACTCTACATGAATTAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGATGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTGTGAAAAACATAACTCTGCCTCTCAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATGTATCTGAAGCCTCAATTTTAATACTTTTTCCTCGTCGCACTCTACATGAGTGCGTGGATTGAAATCAGTGAAGAACAAGGGAGACCAATTTGCAGTAAGCGTCGCACTCTACATGAGTGCGTGGATTGAAATTCGCCAACCTCCGCGTTTCTATCCACCACAACATAGTCGCACTCTACA # Questionable array : NO Score: 8.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.82%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 85141-85438 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIFO010000007.1 Bacillus altitudinis strain B1S54.2_3W19 Sample002_(paired)_trimmed_(paired)_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 85141 32 100.0 34 ................................ GTATCTGAAGCCTCAATTTTAATACTTTTTCCTC 85207 32 100.0 35 ................................ CAGTGAAGAACAAGGGAGACCAATTTGCAGTAAGC 85274 32 100.0 35 ................................ TCGCCAACCTCCGCGTTTCTATCCACCACAACATA 85341 32 100.0 34 ................................ AGCGATGACAAGGCTCGCAAGCACATTGTATTTT 85407 32 78.1 0 ..........C.........A.A...CAC.G. | ========== ====== ====== ====== ================================ =================================== ================== 5 32 95.6 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTATATGAGTGCGTGGATTGAAATAAGCCCTAGAACACCGCCGTATACTGCACCTTTGAGTCGCACTCTATATGAGTGCGTGGATTGAAATAATTCTGTTTGAATAATCAATTCTTGTTTAGTTGTCGCACTCTACATGAGTGTGTAGATTAATAATTGTGAAAAACATAACTCTGCCTCTCAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTTCTGCGTTTTATACAAATTCAAGTACTATCCAGTTCAAAATCTACACATATGAATAATTCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACAAAAGGATAGTGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGTACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGCTTGGCAATTTTCATAATCTCTGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGATGATCTCACCATTCATACTGCGTCCAACATGGAAAGAGGATTTACATTTCACAGCAATACGCCATTGTCTAAACTTCATTGTAGGCGAAATGATTATTTCCTCAATCTCAT # Questionable array : NO Score: 8.84 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //