Array 1 379-1404 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVYX01000056.1 Neisseria meningitidis strain MRSN431237 MRSN431237_contig00056, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 379 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 445 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 511 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 577 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 643 36 100.0 30 .................................... TCCATGTGAACTCGTTGGCGCGTTCGATGA 709 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 775 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 841 36 100.0 30 .................................... GTCGCATGGTAAAATAACCACCGCTTTACA 907 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 973 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT 1039 36 97.2 30 ............A....................... TTTTGTGGAGTTTTGTTATGAGTGAGGGCA 1105 36 100.0 30 .................................... AAGCATTGACGATATTTGTGTGGCGTTGCA 1171 36 100.0 30 .................................... AAACGCCGGTAGGTTTCGTCTGTCTCCATA 1237 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA 1303 36 100.0 30 .................................... GGAAGAGCGGCATCTGAATGCGGAAGAAGA 1369 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : CATCAAATCATCCGCCGCGATTCGATCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 30-593 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVYX01000057.1 Neisseria meningitidis strain MRSN431237 MRSN431237_contig00057, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 30 36 100.0 30 .................................... TGCGGAAAGCCTCCATGCTTTGCAGCACTG 96 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG 162 36 100.0 30 .................................... TTCTTCCCGATTGAGGTTGCTAGTTTTGTC 228 36 100.0 30 .................................... AGTCAATGAATCACTAAAAGCCAAGTCAGA 294 36 100.0 30 .................................... TTTTTCGATTTTTTATATTGAGCGTTTTTG 360 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 426 36 100.0 30 .................................... TGAATCGATATCGAGCCTGCCGGCGGGGGC 492 36 100.0 30 .................................... AAACCGAGTTCAACCGCCACGTCGAAGACA 558 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CCAAGATATATCAAAATTGTAGATGAAAAG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA //