Array 1 8313-11363 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNIS01000300.1 Xanthomonas oryzae pv. oryzae strain FJ24 scaffold299, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8313 31 100.0 35 ............................... AACAAAGTGCTCAGGTAGGAATGGGGATCCTTCCT 8379 31 100.0 35 ............................... CACAGGGGCTGCAACTCAGTCCTGGGGCTTGTTGA 8445 31 100.0 35 ............................... GTACTAGGTAGAGCCTATCCTTGGGCCGTGGGTGG 8511 31 100.0 34 ............................... TTAGTAGTTGTGCTACTAAAGGTCAGCTGCACCC 8576 31 100.0 36 ............................... ATACAATACTCCCGTGTGTTGGTGTGTTGGCAAATA 8643 31 100.0 35 ............................... CAGTGCAGCCAGCATCCTTGCATTGACTCTCCAAG 8709 31 100.0 35 ............................... AACCTAAGCAGATGGGAGGGCTACCTTGCAAGACG 8775 31 100.0 35 ............................... CGGATGTTCGCCGGCGTGCATGTTGTATGGCGCAC 8841 31 100.0 36 ............................... GTCCAATCACTTGTCGAGAGTGGCAAGCAGACTGAG 8908 31 100.0 35 ............................... GCCCTGGAGGCACAGCTGGATGGGCATACAGCCGG 8974 31 100.0 34 ............................... ACGATGGTACAACCACGAACTGGACAGACAATTA 9039 31 100.0 35 ............................... TGGTGCTACCGGCACGGCCTGCATGCGCCACGGAT 9105 31 100.0 34 ............................... TGGAATGTTGTGGACAAGGTAAGAGGCGTTGGTG 9170 31 100.0 34 ............................... GCGCGATGACGTGAGTGGTGTCTGTCTTCTTCGC 9235 31 100.0 35 ............................... GGATCCCTGGCGAACTGAGTTACCGTGTTATGCAG 9301 31 100.0 35 ............................... TCTCCGTTATTGGCCGTGATGATCTTAATGATGGC 9367 31 100.0 35 ............................... TGGGTCGATTTGCCGGGGCTGCTCCTGCTGCGCAA 9433 31 100.0 35 ............................... AATCGCTGGTGACTGAGGTCGACAAGGCCGCTACA 9499 31 100.0 35 ............................... CTGTTAACTCCTGGCATTAATGTGGGGAGGGTTGA 9565 31 100.0 35 ............................... CAGCAATCACTGCTGCTAATCCGTCTGTTGCGACT 9631 31 100.0 34 ............................... TGCCAGGAGAAGGGAAGCTCAAAACTCCGAACCC 9696 31 100.0 34 ............................... TTACTCCTCAGGGTTATGTTAGGTTATACCACAT 9761 31 100.0 35 ............................... ATTGACATACCTGCATTTCAGGCTTTTATTTTGCA 9827 31 100.0 35 ............................... TTGTGTGGCTGTATCTGCACTGTGTGTCGTAATAT 9893 31 100.0 34 ............................... GACAATGGCGTGTCAGCTGCTCTCGGTGTAGGGT 9958 31 100.0 34 ............................... GCGGCCTCCAGCCTCTCAGCAAGCGACTTCGAAC 10023 31 100.0 33 ............................... CAGGCGTCTGCAACACAGCAGCTCCAAACGCTG 10087 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 10152 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 10217 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 10281 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 10347 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 10412 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 10479 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 10544 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 10612 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 10678 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 10742 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 10807 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 10874 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 10938 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 11005 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 11070 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 11136 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 11201 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 11268 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 11333 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 47 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //