Array 1 55260-56630 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRVU01000005.1 Escherichia coli strain KCJK8062 NODE_5_length_210263_cov_17.848898, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55260 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 55321 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 55382 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 55443 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 55504 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 55565 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 55626 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 55687 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 55748 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 55809 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 55870 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 55931 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 55992 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 56053 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 56114 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 56175 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 56236 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 56297 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 56358 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 56419 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 56480 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 56541 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 56602 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82330-83089 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRVU01000005.1 Escherichia coli strain KCJK8062 NODE_5_length_210263_cov_17.848898, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82330 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 82391 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 82452 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 82513 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 82574 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 82635 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 82696 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 82757 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 82817 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 82878 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 82939 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 83000 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 83061 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //