Array 1 190231-191338 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RCJM01000001.1 Moraxella catarrhalis strain 77/338/2 NODE_1_length_218370_cov_21.809708, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
    190231	    28	 100.0	    32	............................	TTTGGCATGAGCATCTGAGAAATACCGCCTAC	
    190291	    28	 100.0	    32	............................	AGCCGCCCGCACACACACAAAACGCATATAAG	
    190351	    28	 100.0	    32	............................	TTTGGCTAAAATGTACCCACATTTAGGCATTC	
    190411	    28	 100.0	    32	............................	GTGGGGTCATACGCCCCAAAAATGATGGCCAC	
    190471	    28	 100.0	    32	............................	ACAAAGTCAAACACCCACGCTTTACTCACCGC	
    190531	    28	 100.0	    32	............................	AATCAGGGGGCAAAGGACGCACGCCACAAATT	
    190591	    28	 100.0	    32	............................	CAAAAATGATGGCCACAAAGTCAAACACCCAC	
    190651	    28	 100.0	    32	............................	CTAGCCGCTGGCATCATGCTGACCGCTTTGAT	
    190711	    28	 100.0	    32	............................	GCTAACAGAGCTTTCAACTGTGTTAATGCGTA	
    190771	    28	 100.0	    32	............................	GAGCAAATACGCAAATTACCGCTCCGAATATC	
    190831	    28	 100.0	    32	............................	ATTTTCACGGTTCTGCTGACGCAACGCTCCCC	
    190891	    28	 100.0	    32	............................	GAGCTTTGACAAGAAAGCAAGAGCAATTAACT	
    190951	    28	  96.4	    32	.......G....................	CAGTTGCATGGGAAGCGTTAACCAAGACTAAA	
    191011	    28	 100.0	    32	............................	AGCTTGCAAATAAAGCAAGTACAGCGTCAGTT	
    191071	    28	 100.0	    32	............................	ATGCCTGACACCACACCGCCTGACTGCACTTT	
    191131	    28	  96.4	    32	..........A.................	TAGCACCGCCCAGCCGCCCACACACGCACATC	
    191191	    28	 100.0	    32	............................	ACATCATCGCCGACATTTTGCACGATGACAAG	
    191251	    28	 100.0	    32	............................	AAGCGATTAATCCGCTCACCAATTGTTCTGTT	
    191311	    28	  96.4	     0	..........A.................	|                               	
==========	======	======	======	============================	================================	==================
        19	    28	  99.4	    32	CTTCACGACCGCACAGGTCGCTTAGAAA	                                	       

# Left flank :   TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATTGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT
# Right flank :  ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACGACCGCACAGGTCGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-7.40,-7.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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