Array 1 205217-205977 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP052764.1 Pasteurella multocida strain Ban-PM4 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 205217 36 80.6 30 ...A.TT..GTGG....................... ATACATGCTAATCAATTTGATAAGGCTGGA 205283 36 100.0 30 .................................... GGTAGATAAAAGTTAAATTCATTGAGTTTA 205349 36 100.0 30 .................................... TTTGCTTTCTTCGCAAATAACGCTTTGACT 205415 36 100.0 30 .................................... ACCAAGAGTTAACTTATAGATGACCAAGAG 205481 36 100.0 30 .................................... TCAAGTTGCCAATTACAGGGACCAAAACGG 205547 36 100.0 30 .................................... AATGGCTGTAGTACTTTATACCACCTCAGC 205613 36 100.0 30 .................................... AGGAAGGTAGGCACTTCGATGACCTCAGAG 205679 36 100.0 29 .................................... CAAGATATTGGCGTACGCGAGATTCGGCA 205744 36 100.0 30 .................................... CATTTCGTGAATAAATCTTTAGGTGCAATT 205810 36 100.0 30 .................................... GATAATGAGTCATTAAGGTTGTCTAAATTG 205876 36 100.0 30 .................................... CTCGACGAATTACGTAGTGATAGCCAATAT 205942 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.4 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : GATGACCTTAAAAGGTTTACCCCTTGCCTATAATAAAGATATGCAAGAAGACAAAGAAGGGATTTTTGATGCCCTAGATACTTGGCAAGACTGTATCGACATGGCGGCTCTTGTGTTAGACGGCATTCAAGTCAATGTGGAACGTACCAAAGAAGCCGCTTTAAAAGGTTATTCCAATGCCACTGAACTGGCCGACTATTTGGTCGCCAAAGGCGTGCCATTCCGTGACTCTCACCATATTGTGGGCGAAACCGTTGTTTATGCTATCCAACAGCACAAAGCGCTTGAAGCACTCAGCGTTGCTGAATTTAAACAATTTAGTGATGTTGTCGAAGAAGATGTGTATCAGATCCTATCTCTGCAATCTTGTTTAGATAAACGCTGTGCCAAAGGTGGCGTATCACCACTTCGTGTTGCAGAAGCCATCGCTGAAGCGAAAGCAAGGTTGAGTTAATTCTCAAATGAAACGATTTTAATCAGCCACAAAGCGCAATAATACT # Right flank : TCTCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCATTTTTAATGCTCAAAAATTACTTGAATTCTCGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACTCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 966452-967259 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP052764.1 Pasteurella multocida strain Ban-PM4 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 966452 28 100.0 32 ............................ AAGTTCAAATTAAGTATATGGAAAAGACAAAC 966512 28 100.0 32 ............................ TACTAATCGTCGCTTCGAGATGAGCATTTGGT 966572 28 100.0 32 ............................ AGCTGGAGACCGCACCTTTTACACAACACCTG 966632 28 100.0 32 ............................ AGACGCGATTGTTCGAACAATATGTCGAGAAG 966692 28 100.0 32 ............................ ACGCAGAAGAAGCGGCTACCTTAATCTCTAAA 966752 28 100.0 32 ............................ AACAGAAAGACAACAACGTAGGAGAACATCAA 966812 28 100.0 32 ............................ AGGGACAACCTACCATATCACGCTGGGTCCCC 966872 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 966932 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 966992 28 100.0 32 ............................ TAGCTGTTTTGGTTGAGTTTTTTATCGGCTAC 967052 28 100.0 32 ............................ ATAGGGACGCTTGCGGTTTATGGATTTTTTAT 967112 28 100.0 32 ............................ AAGTTGTTATATTAAGCATGAAGAAATGAAAC 967172 28 96.4 32 ............G............... AGTCTGTTATTGATTTTCTCAAGCGTTATTTC C [967180] 967233 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.7 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATACAGCGCAGATACCTATTTACACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTCCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACTTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCTCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGGTTTAG # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGAGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1480182-1481650 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP052764.1 Pasteurella multocida strain Ban-PM4 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1480182 28 100.0 32 ............................ AAATAGGGAATCCGTCTGATGCGGTCCACGCT 1480242 28 100.0 32 ............................ GGTATATAGACACGACCCGATTAAACTATTGA 1480302 28 100.0 32 ............................ TATTAGGGGTTTAACGTTATCGAATGATTAAT 1480362 28 100.0 32 ............................ AAGATGCTCAGCGCTACCTTTAAACGAAATAT 1480422 28 100.0 32 ............................ AAAAATATAAACGTTTAAGAGGTCTCTCTTAA 1480482 28 100.0 32 ............................ TTAGGCAACATAAAGATAACTTAATGGTCTAA 1480542 28 100.0 32 ............................ CATGGGGATTGACGATAGGTGGAACTTTGAGG 1480602 28 100.0 32 ............................ GAAAGCCATACGTTTAATCAATGACTCAATCA 1480662 28 100.0 32 ............................ ACAATTTACAACAACACAGTTAACAACAACCA 1480722 28 100.0 32 ............................ GACAACAAGAGATTGCGTTGTTTAAGAGCTTT 1480782 28 100.0 32 ............................ AGTTAACATAAAGATAACTTAAAGAGGCCTAA 1480842 28 100.0 32 ............................ ACTTAGACGTTTTACCCCCAGTGTATAAACAT 1480902 28 100.0 32 ............................ TCTTGGTTGTTGTAAATTGTGGTTGTTAAGTG 1480962 28 100.0 32 ............................ TAATGACCACTAAAAAGGTAATTACCCATCAT 1481022 28 100.0 32 ............................ TTTCCACCGACTTCTAAAAGTAAGCGAACTGT 1481082 28 100.0 32 ............................ AGACGTGTATTAAACAGATAAAGACTAAGAAA 1481142 28 100.0 32 ............................ AATTAATAGGAAAATAAAACATGAAGCAGCAC 1481202 28 100.0 32 ............................ TAGCTACTTTCTATTAGTTGTCTTATAGCCAC 1481262 28 100.0 32 ............................ ATAATGACCACTAAAAGACAACTATTTATCGA 1481322 28 100.0 32 ............................ TTTCCCGCTAATAGGTTTACCGTAAACTAAAT 1481382 28 100.0 32 ............................ TTTTATTTTACTACCTTGCACCAAGGTGTCAG 1481442 28 100.0 33 ............................ AGTGTAGTGGCCACAACATCTAAACGGCTCATG 1481503 28 100.0 32 ............................ ACTACAGGGCACCTGTTAAAAGCTGGAAACAG 1481563 28 100.0 32 ............................ TGTTTGGTGGTTAATCATATTGTTTTGGTGTT 1481623 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : AATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACTCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTAG # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGAGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGTTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //