Array 1 347654-349541 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKXC01000012.1 Listeria monocytogenes strain LMO-020 NODE_3_length_354949_cov_77.1915_ID_171, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 347654 36 100.0 30 .................................... CCATGATTGATGACAAAACGGTATTTTCCT 347720 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 347786 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 347852 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 347918 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 347984 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 348050 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 348116 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 348182 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 348249 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 348315 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 348381 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 348447 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 348513 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 348579 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 348645 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 348711 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 348777 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 348843 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 348909 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 348975 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 349041 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 349107 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 349173 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 349239 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 349305 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 349371 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 349437 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 349503 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [349528,349534,349537] ========== ====== ====== ====== ==================================== =============================== ================== 29 36 99.5 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //