Array 1 97694-95590 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIOK01000007.1 Corynebacterium diphtheriae strain ST378-KZN-2015-45785 45785_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97693 29 100.0 32 ............................. GGTGCCGATCAGATTCACTTTGCCTTGCGCCT 97632 29 100.0 32 ............................. TGTAACGTCGCGTAATGGCAAAGTCTGGTACA 97571 29 100.0 32 ............................. GGCAAGGGCAACAAGTCGCGGGCTATCCCTTG 97510 29 96.6 32 ............................G AAGTCGAGGTTGAGGCTAAGCGGCTTGCTGCC 97449 29 96.6 32 ............................G CTGTAGGAATAGCCGGCAGGCGCTGAATACAG 97388 29 100.0 32 ............................. AGTCGTTGAAAGTCCGTCGTGTCGAGGTCCAT 97327 29 96.6 32 ............................G TCGATCCTTTACCTGCTGCCACGCCGACGACA 97266 29 96.6 32 ............................G AGATGAAAGACTGGACGAACGCCCAGCTAAAA 97205 29 96.6 32 ............................G TCGCCTGCGGAAACCACACCCTCAAAGCGCTA 97144 29 96.6 32 ............................G CACTACTTTCCCATGGTCGTAAAGGTATGTTG 97083 29 100.0 32 ............................. CATGATCACACTCACAACCACACTCACCCTCA 97022 29 100.0 32 ............................. CTGTCATCGGATTTTTTGAGTTTTACCAACCG 96961 29 100.0 32 ............................. GTCTCGCGCCGCGACGCTAAAGCGGTGGGCCG 96900 29 100.0 32 ............................. CATTCTTAGCGCTTGGCGTCGTGCGAGCTGGT 96839 29 100.0 32 ............................. ACGCGCCCTACGTCGGCTAATTCCTCAGCAGT 96778 29 100.0 32 ............................. GCTTATTAGGGCTTCCCCGTCAACAACGGACA 96717 29 96.6 32 ............................G ATTCGACTTCCACCGATCCGATGTTTGCTCAC 96656 29 96.6 32 ............................T CCTCTGCGATTCGTGTGCGTATGGAAACCCTG 96595 29 100.0 32 ............................. GTTGGCGAGGGCACCAGATACCAATGTCAAGC 96534 29 100.0 31 ............................. TCGTCCACAACGGCTAGGCTCTCGGTCTCGG 96474 29 89.7 32 TG...T....................... CAGGTAAATAGTCGAGTTATCCGGATTCCTCG 96413 29 96.6 33 ............................A CAAGGCCACTAGACGCGTATTGCCACAGTTCGA 96351 29 96.6 32 ............................G GAGACCTGATGGCTAAAGCTACTGTGACTTTT 96290 29 100.0 32 ............................. ATCTACACCACACGCCGCACACACGAAATGCA 96229 29 96.6 32 ............................G AAGCCGCGACGAAAAAACAATAAATAGAGCAC 96168 29 96.6 32 ............................G TTTTACGGATGATTCCGAGCGTCCCAGTCGTG 96107 29 100.0 32 ............................. TCTCCCCAGGTCAGATAGAGGCCATCAGGGAG 96046 29 96.6 33 ............................G CAGGCCCCCACGTCAACCCCTGCCACGTCGAAG 95984 29 100.0 32 ............................. TGTGACGTCGCGCAATGGCAAGGTCTGGTACA 95923 29 96.6 32 ............................G TTGGCTGGTGCATCTTCGAATGGGATGTAGTT 95862 29 96.6 32 ............................G CGTCGGATGTGTGCGAGGGCTTCTTTTTTGGT 95801 29 100.0 32 ............................. ACAGGCGGTTGCGCTGATTGGACTAGGAATCT 95740 29 100.0 32 ............................. CTCAAGGCCAGAGCTGGAAAAGCCGACGCCGG 95679 29 100.0 32 ............................. AGATCGTTAAACCAATCTGCTTGCTTTGCGGA 95618 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.2 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : AGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTAGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAGG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //