Array 1 237230-238782 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCI01000050.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3247_R1 NODE_1_length_361916_cov_1.55242_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 237230 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 237291 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 237352 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 237413 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 237474 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 237535 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 237596 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 237657 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 237718 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 237779 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 237840 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 237901 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 237962 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 238023 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 238084 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 238145 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 238206 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 238267 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 238328 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 238389 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 238450 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 238511 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 238572 29 96.6 32 ........A.................... CAGGTTATGCGCAAAAATTAATTCATATTATA 238633 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 238694 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 238755 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 254915-255554 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCI01000050.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3247_R1 NODE_1_length_361916_cov_1.55242_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 254915 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 254976 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 255037 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 255098 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 255159 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 255220 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 255281 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 255342 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 255403 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 255464 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 255525 29 96.6 0 A............................ | A [255551] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //