Array 1 4401187-4402234 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOFT01000001.1 Pseudomonas aeruginosa strain 4068 4068-unitig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4401187 28 100.0 32 ............................ GAAGAACATTGCTGCGGCGATCTGGGCCTCGC 4401247 28 100.0 32 ............................ TGGTGCACAAGAATCGCAAGCGCATGGTGACC 4401307 28 100.0 32 ............................ TTGACCACCCTGGAGACGACCGACCGGGCCGG 4401367 28 100.0 32 ............................ TGATGCCCGACATGGGCCGCTTCGCGGGAACC 4401427 28 100.0 32 ............................ TTGCAGTGATACCGGCGCTTGGACAGCAGGAT 4401487 28 100.0 32 ............................ GCGTTCGTGGACCTGGCAGAGGTGGCGATCAA 4401547 28 100.0 32 ............................ TGGTCAAGCTGGGCGTCCAGGTTCCGGTCAAC 4401607 28 100.0 32 ............................ ACATTCCGCCTTCGTCGCGGGGTCGCACTTCC 4401667 28 100.0 32 ............................ CGACTGTCCCGGTAGAGATCCGTCATCTTCGC 4401727 28 100.0 32 ............................ TGGGCGACTTCAGCCCAGCGCTGGGCTGAGGC 4401787 28 100.0 32 ............................ TGCGGGGACTGCTCTGGTGTTCCAGTCAGCGA 4401847 28 100.0 32 ............................ ATATGCTCATCGGTGACGCCGGCGGCGCGCCC 4401907 28 100.0 32 ............................ CGGCGAAGTCCCGTACCAGCCGCTCAGCAACG 4401967 28 100.0 32 ............................ TTCCTTCCATTGGGTGAGTCGCAGCGGAGCCG 4402027 28 100.0 32 ............................ AGCATTTTGCGCGGGGTTTCCCAAGCAACCGT 4402087 28 100.0 32 ............................ TGGACGAGGTGGGAAAGGTCTTGCTCCAGGTC 4402147 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 4402207 28 78.6 0 T.........AC.....TC..C...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGCCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGTTTTTGGTCTG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGTGGTTCGCTCTCGGCCGGGGCCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGATTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCTCGAAGGTCTTCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4411390-4410762 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOFT01000001.1 Pseudomonas aeruginosa strain 4068 4068-unitig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4411389 28 100.0 32 ............................ TGCTGCGTGGGTACACCATCGAAGATCAAGCG 4411329 28 100.0 32 ............................ GGCACGACGTGCCGCCCACCCCGGCACCTGGT 4411269 28 100.0 32 ............................ TGCTGACCGAAGCGTGTCCTTTGAGAACCGAA 4411209 28 100.0 32 ............................ CATCGAACCGCCCTCCTCGATCAGCTCCGCAG 4411149 28 100.0 32 ............................ GCAACGTCTCCGGCCAGCAGAGCCCGGACGGT 4411089 28 100.0 32 ............................ TGTTCCGTGCCCTCCACCTTCGCCGAGGCAGG 4411029 28 100.0 32 ............................ TAGCTGATCCCAATAGATCGCGCAGTATTCAT 4410969 28 100.0 32 ............................ TCAGTGGCCTCGTTGTTGATGATCTTGTTGTT 4410909 28 100.0 32 ............................ TCGCGGTGACGGGCATGACGGGCGCTGGCAAG 4410849 28 100.0 32 ............................ GAATCGGTAGGCGTTCAACTGGCGGTTATCTC 4410789 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGCGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGCCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTAGGAGGCCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGTTTCACTGCCGTCCAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTCCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCCTGGAAGCTCACGCTCCTCATACAGACGCAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGTATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATCTCCCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGATGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4806790-4805862 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOFT01000001.1 Pseudomonas aeruginosa strain 4068 4068-unitig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4806789 28 100.0 32 ............................ GGGATAATCTCCCAGCAAATGAGCCGCATCGA 4806729 28 100.0 32 ............................ ACCAGCATCATGGACATGTTGGCCACGTCGGC 4806669 28 100.0 32 ............................ TGCCGGTAGCGTAGTCGCCATCAACCTCTCCC 4806609 28 100.0 32 ............................ TTGTGTACGATGCCGTCAGAGGTCTTGACTTC 4806549 28 100.0 32 ............................ TTGGTTGTGGTCGGGACCTACGTCAATGGCGC 4806489 28 100.0 32 ............................ AAGTGCGGGCTTTTTTGTGCCTGACGATCTCG 4806429 28 100.0 32 ............................ TGGCCCAGCGTCACCTTGGCGATGGTCTCATC 4806369 28 100.0 32 ............................ AGTTCCATACGTTCTGGTTGAATCGCAGGAAA 4806309 28 100.0 32 ............................ TGGCTGAGCGGAACCTATATCTCAAAGGTGAA 4806249 28 100.0 32 ............................ ACAGCGGCTCGCCGTTGGCACCGAGTGCGGTC 4806189 28 100.0 32 ............................ GTCCAACGCCTCGATGTCGGCGTCTACCAGAT 4806129 28 100.0 32 ............................ GTCTGCACCGGGCACTCGCTCTGCCAGCCGTT 4806069 28 100.0 32 ............................ ACAGTCGGTCATCTTTCACGCGGCAAGTAATG 4806009 28 100.0 32 ............................ TAATCCTGACAGGCCCGGTTCGCAGCCAGTAG 4805949 28 100.0 32 ............................ AGCATCGAAGTCTGGCCGAACTTCCGCAATTC 4805889 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGTGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCTCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGACCTCCAATTGCCTGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTAGGAGACCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : TCGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTCTCTCTCCGGCAACTCCGCACACCTGTCAGCCACGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGAGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGGCAGAAAACTGCCAGCCTCAGGCCGGCAACAACGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCGATGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGCAGCAGGGCAGCGAGGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //