Array 1 19858-15723 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQRO01000055.1 Streptococcus parauberis strain Fin349 ASN88_contig000056, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 19857 36 100.0 30 .................................... AGAAATGTGGATAGGATAACTGGTCAATAT 19791 36 100.0 30 .................................... GTAAAAAATGGCACAAAGTAATTTTAGTGG 19725 36 100.0 30 .................................... AAAAAAAGTTTTCGCGTCTTCAACCGCTTG 19659 36 100.0 31 .................................... CCAAAAATAAAAAAGTCAAAAATAAAAGGAT 19592 36 100.0 30 .................................... TACGTGATCAAGTATGATTGCTTGTTTATC 19526 36 100.0 31 .................................... TCAATTCATCAATCTCCCAATATGAACAGTA 19459 36 100.0 30 .................................... ATTTATTTTTCCGACAAACTAATAAAGAGG 19393 36 100.0 30 .................................... GGTGGATTTATGAACAATCTTAAAAGACTT 19327 36 100.0 32 .................................... ACAACGCAAAATATACAGATGCAGCTTAGCAG 19259 36 100.0 31 .................................... TTAACTCGCTTGAGTATTTCAATAAAATAGG 19192 36 100.0 30 .................................... AAGTTAAAAACGCAATTGGTGAATACTTAA 19126 36 100.0 31 .................................... ATCAACGGTTAACGTACCAGACGCAACGCTT 19059 36 100.0 30 .................................... AATAAATCTTGTCATTAGACAATCCTTTCT 18993 36 100.0 30 .................................... ATTCTAGAAATGTAAATTAAATCATAACTG 18927 36 100.0 30 .................................... AAAGATATGGGCGATGCGATGGTTTATGTA 18861 36 100.0 30 .................................... TTTATATTTTCATTTTCTTCTGCATAATAA 18795 36 100.0 30 .................................... AGTCTGTGTTTGCGCCTCACTAGACGAGCT 18729 36 100.0 30 .................................... ACCTCTCTCTGTAAAGTCAACATAAGCATT 18663 36 100.0 30 .................................... TGTTTACATGTATATGAACATAACCACCAT 18597 36 100.0 30 .................................... AATGAAACCACAGAAGCTATCGATTGTGAA 18531 36 100.0 30 .................................... CGTGCAAATTGTCGCTCCTGGTGACTATCT 18465 36 100.0 30 .................................... CTATAAAACCTTTCCATATTTACCACCATT 18399 36 100.0 30 .................................... TATTAGAAGCTATATTTCAACCAAGAAGCT 18333 36 100.0 30 .................................... ATACTTAAAAGTGTCTTTAACTAATCTTGT 18267 36 100.0 30 .................................... GTGTGCTAGTGGCGCAAAGCGGATTGCGTT 18201 36 100.0 30 .................................... TGAAGTTAAAGAAGACTTCACAGGCGACAC 18135 36 100.0 30 .................................... AGTACGTTGCCAGCGATATACTGTGACGTA 18069 36 100.0 31 .................................... CGACGGAGAAGAATATTACGATGTCGATTTA 18002 36 100.0 30 .................................... AAAGATAGCAGGTTTCCTTTCGCTATTGGT 17936 36 100.0 30 .................................... CGATTCAACAACCATTTTAGATAACAGTCT 17870 36 100.0 29 .................................... AATTCCCAGACGGTCTCGTTTTATCAGCA 17805 36 100.0 30 .................................... CGCACCATTTCCATTAACGTACAAAGTTAA 17739 36 100.0 30 .................................... TGGATATAAGAAAATCCTTATCAGTATGCA 17673 36 100.0 30 .................................... AAGTATGAAAATGTCTACCACAGTTACAAC 17607 36 100.0 30 .................................... CGGTCAGATTCTACTTGTGCATTACGTTTA 17541 36 100.0 29 .................................... TAATCTTTCCATTCGGTCATAAGAACTTC 17476 36 100.0 31 .................................... CAAGAGTTTCTTGTAACTTACCAGATGCACC 17409 36 100.0 30 .................................... CCCATTTTATAAAGCGCTAGCTTTCTACGT 17343 36 100.0 30 .................................... ACCAGCTTTAGATTTAGTATTTATGACGTA 17277 36 100.0 30 .................................... AATAACAAAATTGAATAACACTGAATTATC 17211 36 100.0 30 .................................... AAGCTGGGGCTGATTTATTACTTAAATTAG 17145 36 100.0 30 .................................... GAGACACAGTACAGGATCTCGAAAGATACT 17079 36 100.0 30 .................................... TCTATTCTCCATCTCTTCAACAGTTCTAGC 17013 36 100.0 30 .................................... GGGTTGATTAGTAGGGTTTGGAATGCTATA 16947 36 100.0 31 .................................... CAAACAAACGAATTATATAGCTTTACACCAG 16880 36 100.0 30 .................................... AAGATATAACAAAACCCCTCACTTAATTGT 16814 36 100.0 30 .................................... TTCTGAATTACAAGGAAGTTGGGAAGTTAC 16748 36 100.0 30 .................................... GACAAAGTAGTTTTTGTAAATGTATCAACA 16682 36 100.0 30 .................................... AATTCGAGGCATGAATGGCATTGTAGTACA 16616 36 100.0 30 .................................... CAGAACTGTATCGAGAGGGTTCTCTAATTG 16550 36 100.0 30 .................................... TTCGACAGTATCAGTAAGGCTGAAATCGTA 16484 36 100.0 30 .................................... ATGTTGCTTTTGCTTAACATCAACTTGTTC 16418 36 100.0 30 .................................... ACGGCAAAAACACAGGCATCAAACCTTTAG 16352 36 100.0 30 .................................... GTGAATCAGTTGGGAACTTGTCAGCAAACA 16286 36 100.0 30 .................................... TCGATTGATGTCTATCCATATTCGGGTCTT 16220 36 100.0 30 .................................... AACTGCACTAGCAACTTGCTTGATTGTTGA 16154 36 100.0 30 .................................... TCTGTAAATATTCCAAACTTGCATTGCTAT 16088 36 100.0 30 .................................... TAGTAAGAGGATATTTTAAAGATTTTGGAA 16022 36 100.0 30 .................................... TGGATAGTAAGTATCCCCTTTATCCCCTTT 15956 36 100.0 30 .................................... GAGGGAATTGAAGATTTAATTCCACTTGAA 15890 36 100.0 30 .................................... ACCTCAATCAAGACCACGATTCAGCAAATG 15824 36 100.0 30 .................................... TGGTAAAGTCTTCTATATTAATCTCACAGA 15758 36 97.2 0 ..................................T. | ========== ====== ====== ====== ==================================== ================================ ================== 63 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGATTCCAAAAC # Left flank : AAAAACCAGAAGTTAAATCAATGGTCGATAAACTTGCTGCGACTATTACAGAACTAATTGCTTTTGAATGTTTGGAAAGTGAACTTGATTTGGAATATGATGAAATAACAGTACTCGAATTAATCAAAGCATTGGGTGTCAAATTTGAAACACAAAGTGACACAATTTTTGAAAAATGTCTTGAAATTCTACAGGTGTATAAATACTTAAACAAGAAAAAATTGCTCGTTTTTATCAATACCGGTTCCTACTTGAGCAAGGAAGAAGTAGAACAATTGTTTGAATACATCTCATTGTCGAATCAATCTGTTTTATTTTTAGAACCACGGAAATTATATGATTTTCCTCAATATATTTTAGATCAAGATTTCTTTCTTATGTCTCCTAAAGTGGTACAATAGTAGTAGAATGGATCCCCGAAATAGGTATCTTTCAAAGTTGAAGTCCTGCTAAGATGAGTAGCGCGATTACGAAATCTTTTGGAAAAATTATTCCACGAG # Right flank : CATTATGTTAATAAGTTTTTGTAGTCTTAGATTTGTTGTTTATTAAAGTCCTTTTTGCCTATTTTATGAGGTATCCACTTGCTTGATCTGCTTATCCAAATGATAGTCATTGCTTTTTGTATTGTCTTTTTCCTTGGGACGATTCTTTTTGTCATTTTATTGATTGCGGATCCTTTGGGAAATCATTAAATTATCACTCAAGTGAAAGCTATTATCATAAAGGCAATTTTTTATGAAAATGGCTTTTTTGTATGGTTTTGGTGAATTTTTGTCATAATATCCAAACTAGGATTTTTTTTGAATATTTATTATGTTTTTTGGCTAGAATATAAATTTAAAAAGCACTATTTTCATTAATATTCTTTGCAAAATTTCTGTAAAAAGCTTGTAAAATAAGGGCTTCTGGTTAATTATCAAATGATTCTAGCTTTTTCTTTGCAAACCCTTACATATGTGCTATGATGAGATAAAATAAGAGGAGATCTTCTAATGGAAAAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //