Array 1 171-4229 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZJX01000060.1 Kocuria varians strain G6 isolate Kocuria varians, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================== ================== 171 28 100.0 33 ............................ CCATCAGGAACGCGATCCGATCGTTGTCCCAGA 232 28 100.0 33 ............................ CGCGATCCACCAGGCAATCGAAACCCAGATGGT 293 28 100.0 33 ............................ CGTCGCCCCGGCCGGGCCCATGGGTCACGTCGG 354 28 100.0 34 ............................ CCTCACGGTCGCAGTGAAGGCACTCACCGCCCTG 416 28 100.0 33 ............................ CGGTGAACTGCCCTATAGCACCAGGGTCCTCGC 477 28 100.0 33 ............................ GTCCCAGCGCCGCAAAGAACAAGCGGAAGCCGC 538 28 100.0 33 ............................ CTGGTTCACGTCGTCGCCCTGTAGCTTGCCCTT 599 28 100.0 33 ............................ CCTGCTTGTCCCCGGTGAGCCATTGCTTGGCGA 660 28 100.0 33 ............................ CCATTTAGGCCAGCCATGAAGCGCATGTTTCTG 721 28 100.0 34 ............................ CCGGCCGCGGCGCGAATGTCGAGGACCCCTACAA 783 28 100.0 33 ............................ CTGGATCGCGCCCTTGAGGTAGTCCAGCGGGTT 844 28 100.0 33 ............................ GCACACGCACACCACTGCAGATGTCACAGGGCT 905 28 100.0 33 ............................ CAGGCAACCCAGATCCGTGAGCTCCAGGACCGG 966 28 100.0 33 ............................ CGTGGATGCGGTGGAGGTGACTTGTTGGCGGGC 1027 28 100.0 33 ............................ CGTGCCCGCCTGGTTGGACACCACCCTGGGTGC 1088 28 100.0 94 ............................ CGTATCCGTGGGGAGGCCACAGTCCCCGGTCGACCGGGCGAAGTCGGGCCTGAGATGAGCCCGTATCCGTGGGGAGGCCACCGGGATCGTGGAC 1210 28 100.0 33 ............................ CGGCGACGACGGGGCACCAGAGCGCATCCGTGA 1271 28 100.0 33 ............................ CGAGGCGCGTGGTCTTATGCAGGTCATCCCGAC 1332 28 100.0 33 ............................ TCTGTCGCGGAGTCCCTGGCGGACAAGGGGATG 1393 28 100.0 33 ............................ GGGCCAGCAGTATTGCCCGCACTTGATGTGGGA 1454 28 100.0 33 ............................ GCGCGATGACGCATGGTTCTCCCAGCTCAACCG 1515 28 100.0 33 ............................ CTGGGTGAAGACCCCCGCCCAGGAGCAGCCGCC 1576 28 100.0 33 ............................ CAACTCCGTGCCGTACGTGTCGAGCTGGTTGGC 1637 28 100.0 33 ............................ CGGGACGCGGCTACCGAACAGGCGCTCGAAGTC 1698 28 100.0 33 ............................ CACGATGGAGGGGAGGGGAGGGGAACGGTACGA 1759 28 100.0 33 ............................ CCTCGTCCACCGTCACATGCGGCAGAAGGCGCA 1820 28 100.0 33 ............................ GGTCGGGCGCGCCGCTGCGAACGTGGCCCTGCT 1881 28 100.0 34 ............................ CTCCTGGGGCGTGATCCATTCGTTGTGCTCGGTC 1943 28 100.0 33 ............................ GGAGCCGTCGAAGTCGATGTACTGGCCCTTCAT 2004 28 96.4 33 ...T........................ GGCGAAATTCCGGGGCCTGGACCAGAAGCGCAC 2065 28 100.0 33 ............................ GCGTACCGGGTGTGGCTGTCCCTGCCCGAGGGT 2126 28 100.0 33 ............................ GTCCTGGACCTCGTCACCCTCCAGGGAACGGAA 2187 28 100.0 34 ............................ GATCGCCGGCTCCAAGTTCCGCGGCAACGACTGG 2249 28 100.0 33 ............................ GTCAGGCAACACCGGCATTTCCTCCGGGGCACA 2310 28 100.0 33 ............................ CTCCCGCGGCAACGTCTCCACCATCACCGTGGA 2371 28 100.0 33 ............................ CGGGAACTCCGGGAAGCTGAAGTCCTCCCTGTT 2432 28 100.0 33 ............................ CATCAGCGCGCCGAACGCGACCCGTTCCAGGCG 2493 28 100.0 33 ............................ CTAGACCCCAGCCAGTGCCGCCCCTGCACCCAA 2554 28 100.0 33 ............................ GCCCGCCCCGAACTCGGCTGACACTGAGGACGA 2615 28 100.0 33 ............................ GAAGGCGTTCAACAATACGAAGGACGGCATCAA 2676 28 100.0 33 ............................ CGGCGACGACGGTGCACCAGAGCGCATCCGTGA 2737 28 100.0 33 ............................ CTCGGACAGGAAGAGCTGGTTGTTCGGGAAGAC 2798 28 100.0 33 ............................ GTCCCTGAAGCACATGGACGCGAAGGCGGGCAG 2859 28 100.0 33 ............................ CAAATAGCCCGCCGCGTAGTAGGGCTGCAGGAC 2920 28 100.0 33 ............................ ATGACGTACCACATGGCTAGCCCTCTTCCCGTC 2981 28 100.0 34 ............................ ACGGGGCCACCTACACCGGGCCGACACATGGTGC 3043 28 100.0 33 ............................ CGGGTCCAACCAGGTGGACCCTGCGTCGGTGTT 3104 28 100.0 33 ............................ GCGCACCATAAGGCGTTCATGGAGTGGCCCGTC 3165 28 100.0 33 ............................ CGGGCGGGTGCGCTGATGCTCGATGATCTGCTG 3226 28 100.0 33 ............................ GGGCTCCTCCCCGATCGAGGCGCTGCGGGACAC 3287 28 100.0 33 ............................ CATGAGCCCGCACACGGCGGCGCCGGCGGCGAT 3348 28 100.0 33 ............................ CGGCGTGTTCCCGGGTGGCGGGGTGGAGTGGCA 3409 28 100.0 33 ............................ CGGCCTGGGTTGCTGACACGTTCCAGCAAGGCA 3470 28 100.0 33 ............................ GTACACGTGGCGCATCCAGGCTGACCTGGACCA 3531 28 100.0 33 ............................ CTACCCGGTGCTGCTGGAGCGGCTGTTTGACTC 3592 28 100.0 33 ............................ CTCCACCCAACGGTCCTGCACCGCCCGGCCCAG 3653 28 100.0 33 ............................ GCACCGCATCGAGGCCCCCGCGGCCGCCTGAGA 3714 28 100.0 33 ............................ CCCACCGGGTGGGGCGAACTCGACGACTACCCC 3775 28 100.0 33 ............................ CGACCTCGAATCCCGCACGAAAACCTGGACCGA 3836 28 100.0 33 ............................ GGCGGGTGACCCGACCCGGGTGACCGTGCGGAT 3897 28 100.0 33 ............................ CCCGGCGACGAGGGTGGTGATGTTGGTGGTGTA 3958 28 100.0 33 ............................ TCTGGGGCATGGTGATGAGGCGCAGGGCGTGAC 4019 28 100.0 33 ............................ CTACGCCCGCTGGGTCGAGGACTACGGGGCACT 4080 28 100.0 33 ............................ CCGGGTGCAGGGCAACGCTGACCCTTCCTACTA 4141 28 96.4 33 .........................T.. GCAGACGGCGACGTCCAAGGCCGAGAGGGACGC 4202 28 82.1 0 C..T.........T.........AG... | ========== ====== ====== ====== ============================ ============================================================================================== ================== 66 28 99.6 34 GTGCTCCCCGCGCCTGCGGGGATGAGCC # Left flank : CAACGGACGGCTCGAACACCTCCGCGGCTCCGCACTCGGCTTCCGCAACCTCACCAACTACATCGCCAGATCGCTGCTCGAGACCGGCGGGTTCAGACCCCAACTACACCCTGGATCATGATGAGCCGGTAATTGCATCAACCGGGCAGAATAAACCCTAGTCACCAAGTG # Right flank : CCCCGGGACCGCCCCTACCCCGGGGCATCAAGTGAGCCCAGTCAGCTAACCCGCGCTCCTCGGTCAGTTTCTCGAAGGAGTTCGCACGTGTGGTCGGCGATGCCCACACGGCAGTCGATGACTCGGGTTCACCTCTCACAAGGTCACTCTCCTCGGGCAATGGTTAGGCGTCGTCGACTTCCTGCTTCGTCCCGGGCCAGCACAGAGCAGAGAAAGACCCCCCAATTCCGCCTCCGCCAGGCGTAAAATCAGGGTCAAGGACGCGGGACGTCCGCGTCCGCCTATGGGAGGAACCCTTCATGAGAGCGGCACGCTACTACGGACGCAAGGACATTCGCATCGACGACCTGCCCGAGCCAGAGGTCGGACCCGGCATGGTGGGAATCGATGTGGCCTGGTGCGGCATCTGCGGCACGGACCTGCACGAGTACCTCGAGGGTCCCATCTTCTGCCCCACGCCGGACACCCCGCACCCCATCTCGGGCGAGACGTCCCCGGTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5974-5578 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZJX01000091.1 Kocuria varians strain G6 isolate Kocuria varians, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5973 29 100.0 32 ............................. CGGATGACGTGGAAGGGATCCATAACCGTGAC 5912 29 96.6 32 ............................G CTCGCATTCCTGGGGATTCAGCAGCCGATCGT 5851 29 100.0 32 ............................. TCGCGCGCGAGTCACGCACGAAGATCGAGGCG 5790 29 100.0 33 ............................. CGTCACGGCACGAGGGAACTGAGGGGTGCGAAC 5728 29 100.0 32 ............................. AACGCGACCAGTCGATCCCAGGCCGGGCCCTC 5667 29 96.6 32 .................G........... AGCTCGACTACGACTCCACCCGCACCGGACGC 5606 29 86.2 0 ......T.T....G...G........... | ========== ====== ====== ====== ============================= ================================= ================== 7 29 97.1 32 GGACGGCCCACGCACGCAGGGGTGAGCCC # Left flank : AAATCCGGGCTGAACCGCTCGGTGCTTGACGCCGCGTTCGGTGAGCTGCGTCGGCAGCTCGAGTACAAGACCGCGTGGTACGGATCGTCCGTGGCCACGATCGGCAGGTACGCACCGTCGTCGAAGGCGTGCTCATCCTGCGGGGCAGTGAAACCCAAGCTGTCTCTGGGTGAGCGGGTCTACGACTGTGACCAGTGCGGGATGCGCCTGGACCGCGATGTGAACGCGGCCCGGAACATCCTCGCCTGGGCCACCGGCGGACGTGACCAGCCACCTGCCCCCGGCACGGGGGCTGACGGGCGTGGAGATCCAGCACCGCCCTCACCACCAGGTGAGGGGCCACCGGTGCCGGCTCAACGAAGCGCTAAGACCGGGTACGTACCGCACCCGGCCACCGCAGCCGAGCAATCGGCTGCTCACCCCCACCAATCGCATACCCCGATCCTGCCAAGCTGAACCTGCGGTACCCCGCTCGACGGTGTTCCCCCAGGTCACGAAGT # Right flank : CGCTGCGGATCAAGGCTCGGCCTCCACTGCGGACGCTCGACGCGCTTCCAGTGGACCATGCGAGGTTCTGGTCCTCGTGCCGGCCCCCGACCCACTGCGGACCCCCGCCCCTCGGGGTCTTGCCGCTGCCCGCGAGCGCCGGGGCCCCGGGTGGGGCCCCGGCGGGTGGGGTTCAGTTGTAGCGCGGGGCGTGGCTGAGGGATTCCAGGCGGGTGTCGAGGTCGGCGGGGTGGACGCCGTAGAAGTGCTCGTGCATCATTTCCGCCCCGTTGTCTTCGTAGGTCACCTGCACGTCCAGCAGCTCGTCTTCCTCGGTGATGGCCAGGTTCATGTCCCGCGGGGCGCCCAGTGCGCCCATGCCGAGGTTGGGGCGCAGGCGGATGGTGGCTTCCAGGTGGCGCAGGCCCTCGGCGGTGGTGGTCTCGTGGATCTGACGGGCGTCCAGGGCGATGCGGGTGCTGCCGGTGATCTGGTTGGCGATGGGGTCCATGGTGGTCTCC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGACGGCCCACGCACGCAGGGGTGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //