Array 1 53113-58388 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHFY010000003.1 Pedobacter sp. SD-b NODE_3_length_209879_cov_51.653812, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 53113 46 100.0 29 .............................................. TGATTAAGCATAAATCTTGCTCACTACTT 53188 46 100.0 30 .............................................. AAAGCTGGTTGACGGCTTAAACCCAAACGA 53264 46 100.0 30 .............................................. GAGTACATGAAGTCAATGTTGCCCAAACAA 53340 46 100.0 29 .............................................. GCGGAACAGCTGGGTATTTTGCTTAACGG 53415 46 100.0 30 .............................................. GATGCTATCTTATTGTATGTCAGATACTCA 53491 46 100.0 30 .............................................. GAATATCTATTGACAGCCCCTGCTTTAGTT 53567 46 100.0 30 .............................................. TTTTGAAGCATCTACCAAAAACACCACCTA 53643 46 100.0 29 .............................................. CATATTCATCGCTCAATGTGTTTTTAATA 53718 46 97.8 30 .............................................A CATCATGTTGCTTTTGCATCTCGTCTAATA 53794 46 100.0 30 .............................................. AAAACCTATAAAGAGTTATTTCACTCCCTT 53870 46 100.0 30 .............................................. TAAGCTACGTTGCTGTTTAATAATGTTAAC 53946 46 100.0 30 .............................................. TAACGTAACCAATGGTAGAACTTATCGATC 54022 46 100.0 30 .............................................. AAGTAATTAGCAAACTACAAACTATTAATA 54098 46 100.0 30 .............................................. GTCTTCATCCAATTGTTGAATAGGTCGCTT 54174 46 100.0 30 .............................................. TAGCGCATTAATGAGTATTGACGAAATAAA 54250 46 100.0 29 .............................................. CTTGTTGGGTAAATAAATGTTATATGAAT 54325 46 100.0 30 .............................................. GCTGTTAATTTTGTTATCACCGCTCCGCTT 54401 46 100.0 30 .............................................. AACAATTGAGCGTTTATCTCCGGTAACAAG 54477 46 100.0 29 .............................................. CAGATTTAAAGTTTTTCCACTTACTCATA 54552 46 100.0 30 .............................................. TTTGTAATTCAATAAAATAACCATCATTCG 54628 46 100.0 29 .............................................. CGTATAGAACCACACCATTTTGATGATTA 54703 46 100.0 30 .............................................. ATAGTTTAGGTAATCCCGATGCTACAGGTA 54779 46 100.0 30 .............................................. CGTGTGCTCACTAATATATTATCGTAATGA 54855 46 100.0 30 .............................................. AAATGACGGTTAATCTGAACATAAACAGAA 54931 46 100.0 29 .............................................. AGAAAAGTTTGCAAGCTTTTTAAACAAAG 55006 46 100.0 30 .............................................. GCTGTATTGCTTCAGTCTTAATATTTTTTA 55082 46 100.0 30 .............................................. AAATCTTCGGTGCATAGAATGATTTTAGAA 55158 46 100.0 29 .............................................. TTTAGCTTCTTTAATCAAAAAGAAGTAAG 55233 46 100.0 30 .............................................. ATCATGTTTAGAGCAGATGTGTTTTGAGGA 55309 46 100.0 29 .............................................. AAATACCGAGATCAAAAGGTTAAATTCTA 55384 46 100.0 29 .............................................. AATGTGCGTACCGCCATCCGTTAATGATA 55459 46 100.0 30 .............................................. ATAGCTAGGCAATTTACCGCAAGAATAGGG 55535 46 100.0 30 .............................................. TATCCCCTTTTGCGGCAGCGGCAGCAATTT 55611 46 100.0 30 .............................................. AATAGTTAACCAAAAAAATACCGATGATAA 55687 46 100.0 30 .............................................. AACTCTTAACCTGCTTTATTGCTTGATCAA 55763 46 100.0 30 .............................................. TTGGTTGAGTGAACCTAAAGCCGGTGTGAT 55839 46 100.0 30 .............................................. ATTTATTGGTTTCATCAGTAGGTACAGGAA 55915 46 100.0 30 .............................................. TTGCGTTTATCATATACTTTTACTTTTCAA 55991 46 100.0 30 .............................................. GTTCCGCTAGCAAGTCTTAACAGGGTTTGG 56067 46 100.0 29 .............................................. ATTATTTCTTGTTAAATTTATTGCCCTGT 56142 46 100.0 30 .............................................. ACGCTTTCCCACCACCTGTTAAATCATAGG 56218 46 100.0 29 .............................................. ATAATAGAAGTAAAGAAGAACTATTAGGT 56293 46 100.0 30 .............................................. ACAAACCATTCTCCGCCATTGCTTCGCCTA 56369 46 100.0 30 .............................................. CAATAAAAGCTTTAGGATCCAGAATCACCG 56445 46 100.0 30 .............................................. AATTCCATGTTCTTATCCAAAGCTTTGAGT 56521 46 100.0 30 .............................................. AATCTTTGCCTAATAATGCTAATGCGCTCA 56597 46 100.0 30 .............................................. ATAGCAGTTAAACTATAAAACAAACTAAAA 56673 46 100.0 29 .............................................. CTTTTTGAAAAATGAATTAACTTGGCATA 56748 46 100.0 30 .............................................. CATTTTGAAGTTTCGCCGCCATCATGCACA 56824 46 100.0 30 .............................................. TATATAATTTGCTCCAATCCCCTTTGAGCA 56900 46 100.0 30 .............................................. TCAAATGGTTTGTATTCCTTAGTTCCAGAT 56976 46 100.0 30 .............................................. TAGAACCAATTTTAAATGGGTTTTCTGATT 57052 46 100.0 31 .............................................. TGATATAAATACTTCCCCTGTAATACCTGCG 57129 46 100.0 29 .............................................. AAGAAGCTTTGGCGGATATTAAATTCTTG 57204 46 100.0 30 .............................................. TTTTCATGTTAAACTGCTTTTTTAACTAAT 57280 46 100.0 30 .............................................. TTTTGTTGTTGCCATTGATTTATATATTTA 57356 46 100.0 29 .............................................. AATCCCACGTTGCAATTTTACAGGGTAAT 57431 46 100.0 30 .............................................. CAAGAACACCCCAACAAATGTAATGAGTTA 57507 46 100.0 30 .............................................. ATATTTTTTGTAAGATTCCACCTTGCTTAA 57583 46 100.0 30 .............................................. TATGTCTTGCTCTTGCATAACTTACTGATT 57659 46 100.0 30 .............................................. AATTGATGGTTTAGAGCATACTTTACAAAT 57735 46 100.0 30 .............................................. AAGCAATGATAAAAAGAGAGAGCTAGCGCT 57811 46 100.0 30 .............................................. GCAATATGACGATGACCCTAGCGCATTAAT 57887 46 100.0 30 .............................................. AGAGAATTTATAAAAAACTTAATTAAATAA 57963 46 100.0 30 .............................................. AATAGGTTTGAAAGCCCAAGATAGCGGAGC 58039 46 100.0 30 .............................................. CATTTCTTTATATAGGTGTTCTGTGTAATA 58115 46 100.0 30 .............................................. GATTAAATGTTCTATAAATACGATGATGAT 58191 46 100.0 30 .............................................. GTGAATAGCTATCGGCTTTTTGTTTCGGCT 58267 46 100.0 30 .............................................. ATGAGGCAAAGCCACGCACCGCAATTATGG 58343 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 70 46 100.0 30 GTTGTGATTTGCTTTCATTCTTTGAACTACTGATATTTACAACAAC # Left flank : CAGTTGGAGCGATTCCAATTAACAAAAACATTCATAATATCCTAGGCAGGCGGTTGTAAGTACCGTATAACTTCCGTAATCCGGCTGTGTTTGAAGTGACCTAGGTATTTTATAAATTCTCAAAGTTATGCAAACACAGAAAAAAACAGTAACAGAGTTACTTAACCTATCAGCAGGTAAAACTACCGATCACATTATTTTAGCTTTAATGGATAGCCAAATGATGGATGACACGCCCGTAGAAAAAATGATTACCGCCGCACAATCTTATTTTCATTTGGTTGCCAACCTTAAAGGGATGGACGTACAAGTTGTAAACGCATTGTAAATGATGGAAACCATATTTGCGTATTACAGCGAGCTGGCCACAAAATACGATAACGGAAAACAGGCCGTAAAAAAGAACTCATCTTTAAATAACAGGCATGGAAGATAGTTCTGATAAAATTATGAGGCGAATAAACGTTTTATTTCCCTTAGAGTTTAGATGGTTAGCTACC # Right flank : CATACCTCGGTTCAAAATTTTGAATATCAGTAGTTTAAATTGAAAATTAGAATTAAAAAAATCGAAGGGTTTATTGCTCTTCGATTAAAATTCTAATCAATTTTCTAATCCTATCAAAAAAGTTCTAGCTGTTGGGGGGTGCTTGGCAATGTCTTTTCTGTTTTCCCGTGGAAAAGCTCCATCATTCCAAATTGTTTGTCAGTAATGGTCATGATGCCAATGTGCCCTTTTGCCGGTAAAATGTTTTTTACCCTTTTAATATGAACATCTGCATTTTCCCGGCTACTACAATGCCTTAAATAGATAGAAAATTGAAACATGGAGAAGCCATCCTGCAATATGCTCTTCCTAAATTTAGAGGCAATTTGCCTTTCTTTTTTAGTTTCTGTTGGGAGGTCGAAAAATACTAGTATCCACAAAATACGGTATTGGTTTAAACGCATAATTTAAAATGGCAGATTTTCTTCATCCGCATCATCTGTTTTGTAAATTCCCTGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTCTTTGAACTACTGATATTTACAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.57%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCATCCTTTGAACTACTGATATTTACAACAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //