Array 1 62889-61841 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRLR01000004.1 Pseudomonas aeruginosa isolate 198, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 62888 28 100.0 32 ............................ TTCGGTTGCATCAGCCGCGTGCGCCGGTTCGA 62828 28 100.0 32 ............................ TGAATGGGGATGCTAACAGCCAGTATCATACC 62768 28 100.0 32 ............................ CTGAATGGTACGAATACACTGTTACCCTGAAT 62708 28 100.0 32 ............................ ATCGAACCGCGGCGACCGTAGGCCATCGATCG 62648 28 100.0 32 ............................ CTCGCCGGGGGGCAGGGATGCAGGGGGTAAAT 62588 28 100.0 32 ............................ GTCTGTTCGTCTCCGAGCAAAGCGCAAACGTG 62528 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 62468 28 96.4 32 ..C......................... TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 62408 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 62348 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 62288 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 62228 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 62168 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 62108 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 62048 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 61988 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 61928 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 61868 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 58-866 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRLR01000072.1 Pseudomonas aeruginosa isolate 198, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 58 28 100.0 32 ............................ TTCCACGCGGGTGACTATGCGCTTACTGGCCA 118 28 100.0 32 ............................ GCCTGATCGACGCCAACGACCTGCCCGAGTAT 178 28 100.0 32 ............................ TTTCCCTGACGAGGCCGACCGATTCGGCTGGC 238 28 100.0 32 ............................ GCCCCAGATCAGCGTTGCGCCGCACGCGATGA 298 28 100.0 33 ............................ TTCGACACTGCTAGAGCAATGTCCGGGCATCCC 359 28 100.0 32 ............................ ACTCAGAAACCGGAGCGAAACCCATTGGACTC 419 28 100.0 32 ............................ TGTATATGCCCGTGATAGTAGCGGGTCCAAAG 479 28 100.0 32 ............................ CTGATCCGGGCGACGGTGGAGACGGTGGGGAT 539 28 100.0 32 ............................ TGGCACTCTGATCAGCGCGCAGCTCGAACTGG 599 28 100.0 32 ............................ GTATCCGCCCGGCCAATTCCGCATCAACGGTA 659 28 100.0 32 ............................ GCGACTGGGACGTTGTGCTGCTGCAACTGACC 719 28 96.4 32 ..................C......... AGAAAAAGCCCAGCCTTCGAGCTGGGCTTTTT 779 28 100.0 32 ............................ TCGAAGGGGGGAAAAATCCGCGAATGAGAGGG 839 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10200-9392 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRLR01000072.1 Pseudomonas aeruginosa isolate 198, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10199 28 100.0 32 ............................ TACTGGAGGTGTCGGAGTTCGAGCCGAGCCAG 10139 28 100.0 32 ............................ TGATCGGAGCCCTCATTGCACACGCTCCAGCC 10079 28 100.0 33 ............................ AACCAGGGCGGATAAAATCTGCCCTTCTGGATT 10018 28 100.0 32 ............................ AGACGATCCGCGCATTGACGACGGGCGGGCCG 9958 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATTAGT 9898 28 100.0 32 ............................ GTACCGGGGTGCTGCCAACCATACGAGGCGTT 9838 28 100.0 32 ............................ ATGACCTGGGCCCGGACCACCTCCAGCCCCTC 9778 28 100.0 32 ............................ CACATGTGCGCTTCGGCGATGGTGTCGGCCAG 9718 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 9658 28 100.0 32 ............................ TGATCCATCACCGCCTTGACACCAACAAAGGC 9598 28 100.0 33 ............................ AGGGATCGCCGTCGAACGGCGACTTGCCCGGAA 9537 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 9478 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTCGGGCGA 9419 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //