Array 1 1055997-1054190 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPUC01000002.1 Prevotella sp. R5107 sequence02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1055996 32 100.0 33 ................................ ACGTTGGTAATTTCGTTGACGATACCGTTGGAT 1055931 32 100.0 34 ................................ CGTGATACCTATCATATCAATGTCGACGCAGCTC 1055865 32 100.0 35 ................................ CCTTAATTTAACGTTATGAAACAGATTGATTATAA 1055798 32 100.0 35 ................................ TACAGTTGCTAATTCTATATTCGCAGGTCTGCAGA 1055731 32 100.0 34 ................................ TTGCAAACAATCATCTCGCAACCGTACATCCTCC 1055665 32 100.0 33 ................................ CTCAGTCTTTAAGATAGATTCTATTGAGCGAGT 1055600 32 100.0 33 ................................ CGTGACTTTGTCTATGATTGCTGGTCGTTGCGA 1055535 32 100.0 33 ................................ TCATTCCGCAATGTCGACTTTACCAATTTTACA 1055470 32 100.0 33 ................................ ATAGTTCAGATGAACGACTATCGTTCATCGCTA 1055405 32 100.0 35 ................................ TCAATTCTATCGGTCAGCCAAGTGTTGGTACTTAT 1055338 32 100.0 33 ................................ CGACTATTTTAACCCGCTCTATCAGCGACTCGG 1055273 32 100.0 33 ................................ TCAATCTCACTCTGGTTATCGTTCTACCCCCCT 1055208 32 100.0 35 ................................ TTTACCTGATTATGCTGTAAACCTTTTTCGGCTTG 1055141 32 100.0 34 ................................ AGACTCGAGAAGAAATCAAGAACGTTGCTGAAGA 1055075 32 100.0 35 ................................ TAATCTTCCTTACATACTTACGCTCCGTCCGTGGC 1055008 32 100.0 35 ................................ AGATTCCAAAGGCGCATTTGTTTCTTCTGCCTTTC 1054941 32 100.0 33 ................................ GTACTAAACGAGATGATTTTAGCGTTCGTGTAT 1054876 32 100.0 33 ................................ TGCAGTCTTGTGGAAAGTATCGCCATAATGACC 1054811 32 100.0 32 ................................ AATCTTCGCAGGACTGCAGACACGAGAGCAAA 1054747 32 100.0 33 ................................ CCTGTCCTTTAACGACAACAAAAAGCGGTGCAA 1054682 32 100.0 36 ................................ AGACCTCAATAATGTTTGCATTATGACGCAGTGGCC 1054614 32 100.0 34 ................................ TGCAAAGCGAGCGTCAGGATTTCGGAACTTACGA 1054548 32 100.0 34 ................................ TACCATCAACAACAGCTATTTTGTGAATCATAAA 1054482 32 100.0 33 ................................ AACCGTCTCAAAGCATCCACAAATCTCCCTACG 1054417 32 100.0 32 ................................ ATTTTTCAGACAAAAGTGCCTACCTTTGCAGC 1054353 32 100.0 33 ................................ TTGTCCGAGTCGCTAAATTGTCCGGGCTTGCCA 1054288 32 100.0 35 ................................ TTTTCCGCAAAGATAGTCTATATCATGTGTTGTGA 1054221 32 93.8 0 ....................A........G.. | ========== ====== ====== ====== ================================ ==================================== ================== 28 32 99.8 34 GTCGCGCCCCACGTGGGCGCGTGGATTGAAAC # Left flank : ACATCTATCCGTTTCCTGGCCTTGGACTTGCTTCTCTCGTAGGCGTTGCCCACAATATCAAGTTTTTCCTCCTCGACAAGTCTGGCCCAGTACGCATGCACTCTGTCACGAACCACTTCCGAGTAACCTTGCAGTTTCTCATCCCAAAGTTGGACATCCTTCTGGTGATTGTACAGATACGTCAGTCCACGCGCAACATCTCTTATCTGCTCTGGGGATAGGTCATGTATAAACCCGACATTGAGCAATATCAAAGTACATACCCTACCGCTGGCATCGCGATAGGACTCCTTCAGACGGTAATACTTCTCGTCTTTACACGTCTGTGGGTTGTAACGTATTTGGGACGTAAAATTCATGCCGCAAAGATAAGCAATCCCTACGACATTGCTGTGTTCTACATTGCGATTTTGAGCAGTTTGACCACGCAAACCCCTATAAACACTGGAAAAAATTCTGAAAAAAAACATTAGAGCGTCAAACTTGGGTTAACACTAATT # Right flank : CACCTACACTCAGATTCTTGAAAGATAGAAGATTTTGTATGTGCGTGCAGAATACTATAGGAATCCCTCGCACAAGCCTCAAGGCTGCAAGGAACAGGCAAATCCTTTGCGGAATCTTTGCGACCTTTGCGACTTGGCGAGATTTTTTCGGAGCAAGAGGATGGGGATATAACAAATCTTTGCAACCTTTGCGACTTGGCGAGGGTTATTCGTGGTAAGGGGATGGGGATAGAACAAATCTTTTACGGCCTTTGCGACTTGGCGAGGGTTATTCGTGGTAAGGGGATGGGGATAGAACAAATCTTTTACGGCCTTTGCGACTTGGCGGGATTTTTCGTGGTAAGGGAATGGGGATAGAACGAATCTTTGCGACCTCTGCGACTTGGCGGGATTTTTCGAGGCAAGGGGATGAGGATAGAACAAATCTTAGCGAGCGTGGAGCTTGGCGAGGGGGCTTTCGTGGCTGGAGGACGGTGATAGACGCAGTGAAAGGGTATTAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1061923-1058133 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPUC01000002.1 Prevotella sp. R5107 sequence02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1061922 32 100.0 34 ................................ TGTCATGAATACCTTTTCGCCACGTTTCAATCGG 1061856 32 100.0 33 ................................ ATTTATGTCAAAAAACAACATCCCGCCTCTTTT 1061791 32 100.0 32 ................................ TATCGGTCAGCCCTCTGTTGGTTCATATCAAT 1061727 32 100.0 35 ................................ CGACTATTTCAATCCGTTATATCAGCGACTTGGAC 1061660 32 100.0 34 ................................ GTATTCTCTTGATGACCTCGGCACGTCCGCACCT 1061594 32 100.0 34 ................................ CGGGACACCTATCATATTAATGTCGACGCAGCCC 1061528 32 100.0 34 ................................ TTGATGATCTCGGAGGTAACGCACTTGTCGGTGC 1061462 32 100.0 32 ................................ TGCTGCCGTTGCATCATATGTTAGTAGCTACG 1061398 32 100.0 34 ................................ CTTTTTGACGACCCGAACCTTTGTACGTCATTGT 1061332 32 100.0 34 ................................ CGAAGAACCCTGCTACTGGTGTTCGTGATGACCT 1061266 32 100.0 34 ................................ ATGATACGTATCACGTTAATGTCGATGCAGCCCA 1061200 32 100.0 35 ................................ TTCACCGTGGCTTATGTAAGTCCGTTGAAAGTGGT 1061133 32 100.0 34 ................................ CTATGTAGCTGTGATAGTCCTGACTCTGTGTCTA 1061067 32 100.0 34 ................................ TAATCACTGGTTGCCTACCGTTCATACTTTCAAA 1061001 32 100.0 34 ................................ TCCCCGTCCGTTTTATCGGGCTTATGGGCGTGGT 1060935 32 100.0 34 ................................ CTCCTGCGTCAAGAAGGCATTATCCCGGTGGTCC 1060869 32 100.0 35 ................................ CAACAGTGAAGTGAGTAATCTAATAGGCACGAATG 1060802 32 100.0 34 ................................ AACATTTCCACCTCTGCCAGTCCACTGGCTTCAC 1060736 32 100.0 33 ................................ ACGCTGTCAAAGAGATTATTAATACGTTTCACA 1060671 32 100.0 34 ................................ AGCGAAGCAGGACATATTACAAGCACTGGCCACG 1060605 32 100.0 35 ................................ TTAGCCAGTTCGAAGCAGGCATTGCGTGCGTAGAT 1060538 32 100.0 35 ................................ AGGATAACGGATATTGTCGATTAAGTGAGTATAAT 1060471 32 100.0 34 ................................ ACTACGTGCTGTCGATGCAATTTGTTGAGCGCAT 1060405 32 100.0 33 ................................ AAGGGAACAGAAAAGACCGTTGCCGACTTGTCC 1060340 32 100.0 35 ................................ AGTCCACACCTATTTTGTCACATAGACCCCCCAAA 1060273 32 100.0 34 ................................ TACGCTGCGCTGCGCTTGCGTCCTCAGCCACTAA 1060207 32 100.0 35 ................................ TTTGCTAAATAGTTTTGGTATATACTTAAATTATA 1060140 32 100.0 34 ................................ AATTCGAATTTAAGATTGTTCTCAGCCATAAAGT 1060074 32 100.0 34 ................................ CTCTATCAGCGGCTCCATACGTCCCGCCGCCCAG 1060008 32 100.0 34 ................................ TTTGAATGGGCGTGTCACTGGGCTGTGCACTGTG 1059942 32 100.0 33 ................................ TGACAGAGCTGCAGAGGCCATCGAGAATCACAT 1059877 32 100.0 34 ................................ ACTCCTTGCTGGTCTTGATACTCTCCATAATGGA 1059811 32 100.0 34 ................................ CTGTGTGCTCTGTCCTCTGCCTGGCAACAATCAG 1059745 32 100.0 34 ................................ TTCCTGGGCCTCGGCTATTTCCTGCTTCTTCACA 1059679 32 100.0 35 ................................ CGGATAATTGGGATAGCCGTAGCCAACACCCCAAC 1059612 32 100.0 34 ................................ CGCATCCGGCTGGAGGCTATCGAACTCTACGAAT 1059546 32 100.0 34 ................................ AGTAGCTCAACTGGATAGAGCAACTGCCTTCTAA 1059480 32 100.0 34 ................................ CTGAAAGAGTTGCGACCGAGGATGGAGAGATGGC 1059414 32 100.0 34 ................................ ACAAAGGAACGTAGTTTAACGAAGAAAGACTGCG 1059348 32 100.0 34 ................................ ATTAATACGTATAATTATGATTACAACTAATGAC 1059282 32 100.0 34 ................................ AACTTAGAGCTGTCTACGCTTGTGCGTGTAGTCG 1059216 32 100.0 34 ................................ CTTAATATGGCTTGATTTGTTAGCACCTCCGCAG 1059150 32 100.0 32 ................................ AATTATCTAAAGATTATGCGCCGACATGCTGA 1059086 32 100.0 33 ................................ TTAAACTCACGTCTCCAGTTCTCTTTCAGCGAA 1059021 32 100.0 33 ................................ CCTTTAGTATGCGTAGTAAGTAACCTTGATACC 1058956 32 100.0 33 ................................ TTTGAATGGGCGTGTCACTGGGCTGTGCACTGT 1058891 32 100.0 35 ................................ TTTTCCTCTGCGTCTATATAAGACTGCATCGTATC 1058824 32 100.0 34 ................................ CTGAAAGAGTTGCGACCGAGGATGGAGAGATGGC 1058758 32 100.0 33 ................................ ATAAAGGAACGCTACACAGGCAAGGACAAGGAC 1058693 32 100.0 33 ................................ ATGTCAGACATGCAGCAGACATAACGAGAGGGG 1058628 32 100.0 33 ................................ TTGTTTCTCCGTTAATTACGACGGTTCACTTCT 1058563 32 100.0 34 ................................ CGCCATAGGAACTTGACTTAATTTTTTGGAAAGA 1058497 32 100.0 36 ................................ AAAAGGTCAAGACCATAGTTACGATACCGAGGTTGT 1058429 32 100.0 32 ................................ TGTACTGAATCTTCTAATTGGTCACAAGTGGC 1058365 32 96.9 36 ........T....................... TGCGTCAACTAAGATTCTCTACCCCCGAGCGGAGAC 1058297 32 100.0 34 ................................ AAATCACGGAACGCACCCACCTTTAGGTTTGGCA 1058231 32 100.0 35 ................................ CTCGACCTTCCTGTGTGTTTCCTTTGGCTCGTACA 1058164 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 58 32 99.9 34 GTCGCGCCCCACGTGGGCGCGTGGATTGAAAC # Left flank : ATATGTTCGTACTGGTTACTTATGATGTGAATATCACATCGCCTTTAGGACAAAACCGACTCAGACAGGTTGCTAAAACATGTCTTAACTACGGAAAGCGCGTTCAAAATTCTGTATTCGAATGCGTCCTGACTGAAGCTCAATTTGTACTGCTAAAGGATAAGCTGTCTGAAATAATAAGTCAATCGGATGACAGCATTTGTTTCTATAAATTAGGTAACAATTGGAAAAGACATGTAGAAAGAATCGGCAAGGACACGTCAGTCGATGTGACTGACGTCTTAATATTATAATGCACTTCACCCATACTTACTCTCAGAATGATTTCGTTTATGCGAACCCTAACCGTTGCACTAAAAGCAGGAATTTTCGCAGAGACTAATACACAGGCAGTTAAGCTTTTTGAAAGGACAATATGCATTTAAATAGCTATGCTTTTCGCCATGTTCGCAAAATATAGTAACTTTGCCTCTGATTATTAGGCAATTGTCTAATAAGCG # Right flank : AGCCCCTCTATATGTATGAACTTAACCCAACTTTGACATCGTATTTTGCTTAGTTGTTCTGTATCAGCAATTTAGTGTTTTTAAAAAGTCCTACTGTGTTCTACAGATTTTTATTTTTTTAAATGGCACTTTACTGATTTTCAACAACTCGTAGATTTCAGCTGCACTATCTGTAGGCACACTGCACAGTCTGGTCTCGACAGCCTCTCCAAGCGCATTTACTGCTGTGGTAGTAACTGCTTTTTGAGTCTTCATGATCCGCATGATCTCCGACCAGTACGGTGTCGAACGCTCCCGCCCATGCTCATCCTTGCCTTGCTTTCGCCGGGCAACCTTCATCTGATGGCGCACGGTGTTTACTATCCAGTAAGCCAGCAGCCCTAAGAAAAGGTGTGCGTCTGCCCTATTGTCAGTCTGGTGGTATATGGGCCTGAGGCTGAGGTCGGTTTTGAGCTGCCGGTTGGAGCATTCTATTTCACGTATAAGATTATAGTAGTTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1092610-1093627 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPUC01000002.1 Prevotella sp. R5107 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1092610 36 100.0 30 .................................... TGACCGACAGAGTTCAAGAATGGGCCATAT 1092676 36 100.0 29 .................................... ATATAGTGAAAATATAGAAACAAATAGTG 1092741 36 100.0 29 .................................... GAGTATATGCAACTAACTCAACATTAAGA 1092806 36 100.0 29 .................................... TGGACGAGGTCGTCACGTACTCCAGTTGC 1092871 36 100.0 30 .................................... CTGTAGTCATCGAGACATAAGAACCTTCAG 1092937 36 100.0 29 .................................... AAGATTTGTTAACAAATCCAGTCCGTAGT 1093002 36 100.0 29 .................................... CGCAGGATGCTCATATAGCTCAGACCTGG 1093067 36 100.0 29 .................................... GACAAACTCAAAGATGATGGTGCGCTATG 1093132 36 100.0 30 .................................... GCTGCCATCGTGAACTCGATGCCCTCCAAA 1093198 36 100.0 29 .................................... GCAAGAGAGCCGAAGAAATCAACAGGCAG 1093263 36 100.0 30 .................................... GACAAAGCGCATTTCTATACTCAGAAGAAA 1093329 36 100.0 30 .................................... TGAACGATGTCTCTTGCGAGCCGTTCCTGA 1093395 36 100.0 30 .................................... ACTATCTTCGATGCTTTCACTTGGCTCTTA 1093461 36 100.0 30 .................................... TCATGGACGGTGAGGTAAAGCACGACCATG 1093527 36 100.0 29 .................................... TATACAGCCACAGCAAGCGGCACCATCGC 1093592 35 77.8 0 ......................-.GG.C.T.T..TT | C [1093621] ========== ====== ====== ====== ==================================== ============================== ================== 16 36 98.6 30 GTTGCGGTTTGATGTAGGAATAGAACGATATACAAC # Left flank : AAATTCTATAAAGGTGAAACAAAAAAGCTTTCCTTGCCAGTTCTTATATGACTTTTAACCGACTTAATGCATATCATATCATGTGGCTGTTCGTATTCTTCGACTTGCCTGTGACTACAAAGAAAGAACGCCACGACGCAGCACTCTTCCGTAAGAACCTGGAGAAAGATGGCTTCTCCATGATGCAATTTTCTGTTTATATCAGGCATTGCGGTTCCTATGAGAGTATGGATGTTCACGTCAAAAGGGTAAAAAGCCTTATACCAAAATATGGGGCCGTAAGTATTCTCTCGGTTACAGACAAGCAATACAGTAATATATATAACTTCCGTGGAGTACCTAAAAATCAGAAACTAAAAAAAGAAATAAAACATATCAGCGAACCGATACAATTAGAACTTTTTTAGTATCTTTGCACTGGAAATAGACCTACACTTCCGTTTTTTTTATCTCTCCAATGGCCTTGAATCTCTTTATTTAAGGGCAATTTAGAGAATAAG # Right flank : TTAAGCCGACATAGAAGACAATATGTCACAATGTAATCCGTTTAAATGAATGTGACGATAGGCACAAACGCCCGAAGGCGGTTTCTCAACCGCCAGGCTCTTAATACCTTTTGTCATATATTTTTATTTTTGAAGAGGGGGTTTATGGTATTTGTGCGATTAGTGCACTTTGTGCCCCCTCTTCTTTTTACACTGCAAAGATACAAAATAATTAGCTAATAACCAAACAATTACGCACTTTTATCATCTCGGATGCAACTTTTTCTTCCCTATAAGGGATTAAGAGTTTGGCGGTTGAAAAACCGCATTTGCTGAGCCGAGATTTGTTAAATTTTATCCACTCAGTACCAGATTATCGTAGGATGAACAAAGGCAACTGTAAACACAAGTTGTCCGACATGCTTCTGCTGGTTATTTTGGCCAGGGCATGCGGCTGCGAGACTCGCAAGGACATTGTGGCCTTTGGAACGATCCATTTGAGCTACTTGCAAGACCACCTC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGTTTGATGTAGGAATAGAACGATATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 1097978-1095256 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPUC01000002.1 Prevotella sp. R5107 sequence02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1097977 36 100.0 29 .................................... GAACAGCAGCGCATAGGCGTTATCGGCGA 1097912 36 100.0 30 .................................... ATGGATGCGTGGATGACCCGGCATGCCATC 1097846 36 100.0 30 .................................... TGCTTGAATTGTCGGGCCTTTGGCATCTTG 1097780 36 100.0 29 .................................... GTCGGTGTAGTTCATTCGTATCATTACGA 1097715 36 100.0 30 .................................... CAGCGATAAGGAGATATTGCGCCCCTTCTA 1097649 36 100.0 29 .................................... CATTACCCCATGCGGGTCACAATAAATAT 1097584 36 100.0 30 .................................... ATATCAATGGAGCGGTGGACAAGACGCTGC 1097518 36 100.0 30 .................................... TCGCCCTGCCCAACCCCGAAAGGCTGCCGC 1097452 36 100.0 29 .................................... TAAATCAAACGGCAATGAAAGAATTTCTG 1097387 36 100.0 30 .................................... AAGGATGTGACCGCAATGGTGCTGAACACT 1097321 36 100.0 29 .................................... TTGATACTTGCAAGCATATAACAATTAGT 1097256 36 100.0 29 .................................... CTACTGCCGTTACTCTTCATCTGGAAAGC 1097191 36 100.0 29 .................................... TCGTTTTTTTGCCGGTGACCTCATTGCGG 1097126 36 100.0 30 .................................... ACAATTTATGCTCTTTATTTTTAAATTAAA 1097060 36 100.0 29 .................................... TATCTATCAATAGAAGAATTAAACATAAA 1096995 36 100.0 30 .................................... TCACATACAGCATCAACGTCGACGCTGCCC 1096929 36 100.0 29 .................................... TTTGCGAGTCGTAGTCGATTCAGTATCGA 1096864 36 100.0 30 .................................... CATATTAGGGAATTGCAAAGAGAGTCCAAA 1096798 36 100.0 30 .................................... TGAGGACTGACGCCTAATAGCTTGGCAAAC 1096732 36 100.0 30 .................................... CCAAACCCCGTTGTAAGTAAATTCATCACG 1096666 36 100.0 29 .................................... GGGTCGGCGCTCTTATAGATAGCCTCCAG 1096601 36 100.0 30 .................................... CATTTTGCACTCCTCGTTTCCCTTATTACG 1096535 36 100.0 29 .................................... TAATACTTTAGGAATGTTAGCACTGCCAC 1096470 36 100.0 30 .................................... CGACTTGTTCAAAGTAGCATTGAACGAAAA 1096404 36 100.0 30 .................................... TGTCGACCATTTCAGACGTTCGTGCTCTTG 1096338 36 100.0 30 .................................... CATCCTAATAGGTCAGGGTTACCACGTTGG 1096272 36 100.0 29 .................................... AGTACAATCTGAACAACGAGAAATCGAAG 1096207 36 100.0 29 .................................... CGCACAGGCCGAGAAGGCCTCGAAGGCCA 1096142 36 100.0 29 .................................... CCGAATAGTTTTTGGGATGGTTGCGGACG 1096077 36 100.0 29 .................................... GCATGAGGTTGCCACTATCATAGTAGTTA 1096012 36 100.0 30 .................................... GAACTGTGCGAGCCGCTGCCAGTCGTTCTC 1095946 36 100.0 30 .................................... GACGGAGGTACTTTGCATCTTCGGTGTGTG 1095880 36 100.0 30 .................................... ACCTTTCCTTGTTCAAAAAGCGTTTTATCA 1095814 36 100.0 29 .................................... TGCATGGCATGACACACGCAAGAGCAAGC 1095749 36 100.0 29 .................................... TCGGTTATGATGCTATGTATTGCGATGGA 1095684 36 100.0 29 .................................... CACGAGCATAGAGACCATTCTCGAAGCCT 1095619 36 100.0 30 .................................... TTGAATGTCTCTATCTTGGTGATATATCCC 1095553 36 100.0 29 .................................... CGTTTCTCGAACGACGCGAAATTCAGATT 1095488 36 100.0 30 .................................... CGTGCTGGCTGTGTTGAGTTTGAGATAACC 1095422 36 100.0 29 .................................... GTTTACTGTATTTAGTATAAAACCGCTGG 1095357 36 100.0 30 .................................... CAGGTATTGCGATGATACCGTGATGCTTGC 1095291 36 72.2 0 .........................ACGGTTCTTT. | ========== ====== ====== ====== ==================================== ============================== ================== 42 36 99.3 30 GTTGTATATCGTTCTATTCCTACATCAAACCGCAAC # Left flank : TTGTCACAGAGAGCCACCTCTCCATAATCTTTAATATCCACTTGATTTTTCTTGCGCATATATGAGCCCTCGACAAACTTGCCGTTTACAATTTCTCCTACCGTTCCTTGGTCTACGGGGATAGGCTTCCCGTTAATTCTTTTGCTCGTCCTTTTTATGACGACAAAACGACTGCCTCTCTGTCGGACTATCGTACTTTTGGGGCGGGCGACTGACTTTATCTCTTCTGGAATAGCCATAAATATGTATAGTATCTATATAATTAAAAGAACTATACAAAGGTACAAATAAATGGCCATATCTGCAAGAAATTACCAATAATATTGGCAAAAATAATTATGCAGAGACTAAAACAAGGGGAAGTTTAAACGGGCTTTCTACGAAAGAAAGCCCTTGCTAAGCCAGAAACGGCAAAGCAAGGGCCAAATTGTATAGTGTCTCAAATGGAGGTTTCTTTAATCAAACCGCAACTCGCTCATAGAGTGACTGGGCAGTGCAGA # Right flank : ATTTAAATTTAGACTGACATGGCATGATTGTTGCTCAGTCTCCGCTTTACCGCAGAAATGCTATTTGTAGTAAAGGTCTGATGACCAATGGATAAAGTATCCCCTACCCAAGCTGGATGTAGCTTAGGGCTTATTATATATCCCTCAAAATTAACGACCTCTACAGACTGAGAAGAGAAATAGCATAGGCCAAGCTGTTCTTGGCGTAAGATGCAATGGCTGAGAACTTGACTTTAAAGAGTTCTTTCCTCTTTCTGATGGTCTCTGGCAGGTGCTTTTTGGAGGCTATGGTGTAGATGATATAAACAAGCTTCTGGATCGAGTCCAAGTTTCTGGCCGACTTTGTTTCTTTTCTCTTTGTGCGGTCCTGGCGCATTCTTGCATCCAGCGTCCAATGGAGATTGTTCTCGATTCCCCAGTGCATGCGGCTGATTCGATCCAAAGTCTGTGCCCTTTCTTCCAAACTGGTTATATAGTACCTCGTCTGTTTTTGTTCCGTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATATCGTTCTATTCCTACATCAAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 5 1103172-1103396 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPUC01000002.1 Prevotella sp. R5107 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 1103172 27 96.3 38 ......G.................... TGGAAATCAGATGTATTGAGTATTGTCCAGTTGCGGTT 1103237 27 100.0 39 ........................... GTACTTGCCGGTCTCACCCGCGGCCGTTACGTTGCGGTC 1103303 27 100.0 39 ........................... AACACCTGGCGCTCATCAATCAAGCTGTGGGTTGCGGTT 1103369 27 85.2 0 .................C...G.A..G | G [1103390] ========== ====== ====== ====== =========================== ======================================= ================== 4 27 95.4 39 TGATGTAGGAATAGAACGATATACAAC # Left flank : CTTTCCATTCACGCCCACATCCCGCAGCGCCAGTTCATAGGCGACTCGCAGGAACTCATTCAGAAACTCAACACGATTATCAATAACTCTTTAAAAACAATAAAAGATGGAATCATTACTCTTGCCAATCATTAATTACATTTCACAATCATTCCCCGAAATTCCTTACGTCGACGAGGACTACGGACAGCTCGAAGCCATCGACAACGAGAACATGGATAACTATCCCGTCGTATTCCCCTGCGTCCTCATCAATACGGATTCCGTCGACTGGTCGTCCCTTTCTGCAAAATCACAGAAAGGCAATGCGCACATCTGCGTCCGGCTCTGCATCGACTGTTATGCCGACACGCACTTCGGCTCTAACACTACAGATAAAATAAAGGAACGCGCCGACCTTGTCCACTCCCTCCACGCCGCGCTCCAGACCTACCGACCACTCGCCGTCGGCGCGCTCGTCAGAACCAAGTCAAAGTTCTACGCCTGGTTCCAGTTGCGGT # Right flank : GATAGGCGGCACTACTTTTGATAAGATAGGCTGCTCTCGGGAATGAAAAGAAAAACGATGTTTTTCTTTGTCATCCCACTCGTTTGTACTATCTTTGGGTAAGATAGGCTGCACCTCGGAAATAAAAATAAAACGCGTTTTATTTTGTATTTCCCTCGGTTTGCACTATCTTTGCAAAAAAAGAAAGGAATAATGAATGAAACCGATACTCAACGACTATCACAAGAAGATCAACGAGGTGAAACTCCAGTCCGTGGAATCCTGGAGCAAGCTGAAACTGTCGCACAAAGAGTGCTTAAATCAATTCAAGCGGTTGCGGGAACAACGGATTGCAAGAGAGTCCAAATCGCTCGCTTAACAGATTTTGCCAAGAATAACAAATGCTGGATAGATTCACCTGAATCACTTGGCGATTTTGCTGATAGAGGTTCGGAGAACGAAGTTTATCTATCCAAAGACAATGATGTTGTTTATAAACTGAATGACTTCCGTTATTCAGA # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGATGTAGGAATAGAACGATATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //