Array 1 64887-63883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKGD010000018.1 Escherichia coli strain UPMP 809 contig00018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64886 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 64825 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 64764 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 64703 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 64642 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 64581 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 64520 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 64459 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 64398 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 64337 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 64276 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 64215 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 64155 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 64094 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 64033 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 63972 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 63911 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43917-44982 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKGD010000038.1 Escherichia coli strain UPMP 809 contig00038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43917 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 43978 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 44039 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 44100 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 44161 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 44222 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 44283 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 44344 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 44405 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 44466 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 44527 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 44588 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 44649 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 44710 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 44771 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 44832 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 44893 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 44954 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TCGAAGAAGAAAGGGAAATAATGCGAGGAACGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //