Array 1 73270-73420 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWKK01000020.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate STM217, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 73270 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 73331 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 73392 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : CCGGCATCAGCGCCGATCCGTTCATAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 64-1373 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWKK01000078.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate STM217, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 64 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 186 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 247 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 308 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 369 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 430 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 491 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 552 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 613 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 674 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 735 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 796 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 858 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 919 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 980 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1041 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1102 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1163 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1224 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1285 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1346 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17505-19469 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWKK01000078.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate STM217, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 17505 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 17566 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 17627 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 17688 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 17749 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 17810 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 17871 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 17933 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 17994 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 18055 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 18116 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 18177 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 18238 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 18299 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 18360 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 18421 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 18482 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 18543 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 18604 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 18665 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 18726 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 18788 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 18891 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 18952 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 19013 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 19074 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 19135 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 19196 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 19257 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 19318 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 19379 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 19440 29 96.6 0 A............................ | A [19466] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //