Array 1 55040-56267 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRAA01000032.1 Pseudomonas aeruginosa strain env238 NODE_32_length_87176_cov_18.3478, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 55040 28 100.0 32 ............................ TATCAGTGATGAGCAGTTGGCGGAGGTTGAGG 55100 28 100.0 32 ............................ TACATGATGCGACCCGAATTTCGCATTCGAAA 55160 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 55220 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 55280 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 55340 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 55400 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 55460 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 55520 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 55580 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 55640 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 55700 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 55760 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 55820 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 55880 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 55940 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 56000 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 56060 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 56120 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 56180 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 56240 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 67280-64792 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRAA01000032.1 Pseudomonas aeruginosa strain env238 NODE_32_length_87176_cov_18.3478, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 67279 28 100.0 32 ............................ ATAGACCTGAAAGAGGCCGCCCAAGTCCTGAT 67219 28 100.0 32 ............................ TCGGTCGGGCTGCGCCTAACGTAACGTCTGCA 67159 28 100.0 32 ............................ AGTCGATGAACATGAAAATCCCTGTCAATATC 67099 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 67039 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 66979 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 66919 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 66859 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 66799 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 66739 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 66679 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 66619 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 66559 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 66499 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 66439 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 66379 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 66319 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 66259 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 66199 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 66139 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 66079 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 66019 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 65959 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 65899 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 65839 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 65779 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 65719 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 65659 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 65599 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 65539 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 65479 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 65419 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 65359 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 65299 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 65239 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 65179 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 65119 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 65059 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 64999 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 64939 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 64879 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 64819 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 42 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //