Array 1 12573-10623 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZWR01000044.1 Neisseria meningitidis strain Neisseria meningitidis isolate B332, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 12572 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 12506 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 12440 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 12374 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 12308 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 12242 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 12176 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 12110 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 12044 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 11978 36 100.0 30 .................................... ATAAAAAATAAAAAAAACCAAAAATAATAG 11912 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 11846 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 11780 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 11714 36 100.0 30 .................................... AAAACTTTTTAGGGGGTCGGGAAAAAATAC 11648 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 11582 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 11516 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 11450 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 11384 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 11318 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 11252 36 100.0 30 .................................... AAAACTTTTTAGGGGGTCGGGAAAAAATAC 11186 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCATCAGAACG 11120 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGTCGGAAAAATCC 11054 36 100.0 30 .................................... AAGCCTTTTTTGAACTCGCTGTTCATGAGC 10988 36 100.0 30 .................................... CTTTTCCGGCAGAATAGGCGAGCGCGTCGC 10922 36 100.0 30 .................................... GGTTCGGTTTTCTGTAACGCCATATCGCCA 10856 36 100.0 30 .................................... CAAATGATGGGCAACAAATTGACTCTGCCT 10790 36 100.0 30 .................................... CGAAATTTGATGCATAAAATGCGCCAAAAA 10724 36 100.0 30 .................................... CGGAGCTGGTCGCGCCTTTGGTGTTCAGCA 10658 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : AAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //