Array 1 2425763-2425426 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066060.1 Actinomyces oris strain FDAARGOS_1051 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================ ================== 2425762 25 100.0 26 ......................... AGCGACGGCAAGGTCTCCATCACCAA 2425711 25 100.0 26 ......................... TCCGACGGGAAGGTCTCCATCACCGT 2425660 25 100.0 26 ......................... AGCGACGACTACCTCTCGGTCACCGT 2425609 25 92.0 32 ............A..A......... AGCAATTCCACCACGGGGGAGTCCATCACCCT 2425552 25 84.0 26 .G....CA.G............... AGCCGCTCCGGGGTCTCCATCACCAA 2425501 25 100.0 26 ......................... TCTGACGGCAAGCTCTCCATCACCAA 2425450 25 76.0 0 .............A.C.C..T.GT. | ========== ====== ====== ====== ========================= ================================ ================== 7 25 93.1 27 CAACGGTGACGGCTCGGGCACCTAC # Left flank : GGGAACCGGGTGGCGACAACGATTCAGTAACGTTCAGGTCATGACAAAGCACTCATCTCCCTGCCCTCCCTCGCCCTCATCGCCGCCCTCGCGCTGAGCGGCTGCTCCCTGTCCGTCGGAGGCGGCTCGTCCTCGCAGGCTCAGGGTCAGCAGACCCAGGCCAGTCAGGCCGGCTCGGACTCCGCCGGCTCCGCGGGAAGCGCCCAGGGCTCCGCCTCCGCCCCGGCGTCGGCAACGGCCGCCTCTGCGGGCCAGGCCGTCGCCGGCTACGAGCCCGGACAGATCCCCCCGATCCCCATGATCTCCCTGCCCGATCTCAGCCTGCTCACCCAGTCCACGGGCGCCTTCACCCCGGATCTCACGCGCTCCATCACCTCCCAGCCCGGCATCACGGTCAGGCCCGCCCGCTGCGACGCGAGCGGATCGCTCGTCTCCGGCTCCACGGTCCTGGGCGGTGATGGCTCGATGACCACGAGCTCGGGGAGCACCTCGGTCACCAA # Right flank : AACGGCTCCACGATTTCGGCCAAGCCCGTTCCTAAGGCCGGCAAGGTGGGCACCTTCCCCTCCATCGACGCCGCCAAGCCCGTGCAGTCCTGCGGCACCGTCATCACCCTGGAGGACAGCGTCCTGTTCGACTTCGGCTCATCGGAGCTGCGCGGCGAGGCCTCGACCACGCTCACCAACCTGGCCACCGTCATCAAGGACTCCAAGGCCCCCAAGGTTCAGGTCCAGGGCCACACCGACTCCGTCTCCGACGACGCCTTCAACCAGAAGCTCTCCGAGCAGCGGGCACAGGCCGTCTCGAGCGCCCTGAAGTCCGACGGCGTGGCCGCCGACCTGGAGGCCGTCGGCTACGGCGAGACCAAGCCGGTGGCCCCCAACGAGAACCCCGACGGCTCCGACAACCCCGCCGGTCGCCGCCTCAACCGCCGCGTCGAGGTCTTCGTCCCGGCCTTCTGAACCGTCACCCGGCCATCAGACCGCACGTGCATGATGCCCACCCG # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.20, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAACGGTGACGGCTCGGGCACCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 2803805-2804627 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066060.1 Actinomyces oris strain FDAARGOS_1051 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2803805 28 100.0 33 ............................ GCAGCTCCGCCGGCCGACCTCATCACCTACCTG 2803866 28 100.0 33 ............................ GCCACCGTCGGGGGTCAGGTTTTCGTCGGCCCA 2803927 28 100.0 33 ............................ GGCGACAACGCTCAGTCCCTCACGGTCGAGGAG 2803988 28 100.0 33 ............................ GGGCCACCAGGGCCATGGCGTCGTCCGGACCTT 2804049 28 92.9 33 .......T............T....... GTCCACTCCGGTTGAGGAAGTGACATGGCCCGA 2804110 28 96.4 33 .C.......................... GCCGGCGGCCAGTGCCTGCTTCCACGCCTTCCG 2804171 28 75.0 33 .....T.T....CGC..T.....G.... CGTCAGGCCGTCCGTGGTCAGCAGGCCGACCGG 2804232 28 89.3 33 ............CTC............. GGACTCCAAGGAGGACAACTCCAAGGGCCAGCT 2804293 28 92.9 33 ............C.C............. CTGGAACCCGAAGGCCGGTTCACACGCGGGCGC 2804354 28 92.9 33 ............C.C............. GAGGGACGGCATGCAGACCAACGACGTTATCGA 2804415 28 89.3 33 ............C.C........G.... GCGGTCCACGCTCTGGTGGTGAGTGAAAGCCTC 2804476 28 100.0 33 ............................ GAAATGACCTTTGCCCGGAATCTCCAGGAACGC 2804537 28 89.3 33 ............C.C.........A... GACCCTGTACCTGCGTGCCCACCTGGGTCACGC 2804598 28 96.4 0 ........................C... | TC [2804621] ========== ====== ====== ====== ============================ ================================= ================== 14 28 93.9 33 GTCAGCCCCGCGTATGCGGGGGTAGAGG # Left flank : CGGGCTGGATGCTGCCACTCATCGGTGGGTTGGGTCGCCGTCACCTGCCCGTTCTGCGGGGGGTGCTCGTGGCCGGGGGTTCTCGGCTGCCCTCCGTGGGACTCGCGGTGAGGACGGGGGTGGTTGAGGCCAGACTCGCTGAGACCAGGACATTGGCTTCTCTGCCCCGAGTTTTGCGGGCCGCTACCGCTCCTTCGTCGTTGTGGACCACCGTTGTGCCCACGGCGGAGGATCCTGAACACATTGTGTCCTTGTTGGAGGAATGCGCCTCGGGGCTCGGCTGCGGACTCGTTGGGGCTGAGCGTCACTCCGACTCACGAAGCGACGGAGGTGTCGATGTGCAGGAGGACAACGGGCGCTGGCACGTCTCGGTCACCTTCGACGCGAAAGTGCCCGGGCCGGTGGTCTTTGACGGTGCCCTCATGGTTCCCCTGGGGGCCACCACCTTGGCAGTGAACCCACGGCGACCCCGAACCGACTAACACCGCAGGTCAGCAAGT # Right flank : GGACCTGCGGCTGAGGCTGTCCTGGGGCGGCCCCCGGTGAGGGCGCTCGGCTCCGCCGCTGAGACCACGCAGGACCTCGCGGAGTCGAGCCCGTTGGCAGCTCAGTGTCCACGGTGCTGACATCAGCGGTCCCGTCGTCGGAAGGTCCAGTAGGAATCGTTGGAATTCCGCGGTTCTTTCTTGGATTGTCGCATCGGAGTGGCGTTAATGTCAGCGTTGTGGACACTGACGCCCCGCCAGGCCGCCGTGAACGCCCTGCTCCTCAGCCGGCCGTGACCTTGAAGGCTCCGACCCGCCCAGCGATCCCCGCCGCCAGGTCCTCGATCCCCCGGCCCCGGGTGGGGGCCGGGTCCCCGTCGGGATCCCGTCGGTGGCCCAGCGCCCTACTTGGTGGGGGTGCGGCCCAGGGTGAGGTAGCCGGGAAGCGTCTGGTCCTGGCCGGCGCTGGAGAAGCGCAGCGGCTGGCCCGAGTCCAGCGGGTTGACCACGCGCACCAGGAT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCCCGCGTATGCGGGGGTAGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //