Array 1 215707-213846 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOXW01000022.1 Salmonella enterica subsp. enterica serovar Senftenberg str. 604314 SEES4314_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 215706 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 215645 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 215584 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 215523 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 215462 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 215401 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 215340 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 215279 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 215218 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 215157 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 215096 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 215035 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 214974 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 214913 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 214852 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 214791 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 214730 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 214668 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 214607 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 214546 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 214485 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 214424 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 214363 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 214302 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 214241 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 214180 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 214119 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 214058 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 213997 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 213936 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 213875 29 100.0 0 ............................. | A [213848] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGATCGCCCGGGACTCC # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 443-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOXW01000042.1 Salmonella enterica subsp. enterica serovar Senftenberg str. 604314 SEES4314_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 442 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 381 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 320 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 259 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 198 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 137 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 76 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GGGCCAGTTCAACAAACACCACGACGCGGGAATGTGTTCCCCGCGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19987-16988 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOXW01000042.1 Salmonella enterica subsp. enterica serovar Senftenberg str. 604314 SEES4314_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 19986 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 19925 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 19864 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 19803 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 19742 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 19681 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 19620 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 19559 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 19498 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 19437 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 19376 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 19315 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 19254 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 19193 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 19132 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 19071 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 19010 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 18949 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 18888 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 18827 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 18766 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 18663 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 18602 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 18541 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 18480 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 18419 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 18358 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 18297 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 18236 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 18175 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 18114 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 18053 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 17992 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 17931 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 17870 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 17809 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 17748 29 100.0 33 ............................. CTTTCCTTGCGTCAATTTTTGAGGGAGATTGAT 17686 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 17625 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 17564 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 17503 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 17442 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 17381 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 17320 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 17259 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 17198 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 17137 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 17076 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 17015 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 49 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //