Array 1 96367-94934 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMXD010000002.1 Escherichia coli strain 18-47-58 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96366 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGCGA 96305 29 100.0 32 ............................. TGGATATCTCCGATTCCCTGGCTAAATACGAG 96244 29 100.0 32 ............................. TGCTGTACGCGCTGAACACGTCGCTCAGTGCC 96183 29 100.0 32 ............................. CGGTCCGCATCGTCCTGATTGTTCTTACACTG 96122 29 100.0 32 ............................. TCGCCCGGCGTCAGCAGATCAGCGGCCTGCCA 96061 29 100.0 32 ............................. CAGATCGCGCAGCGTCCCGACATCCTGCCGTA 96000 29 100.0 32 ............................. TCAAACATTTGCGCGTTACTGCGTGGATTTGC 95939 29 100.0 32 ............................. TCACGACGCCCGCCGCACGTTCGGCAGTGTGG 95878 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 95816 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 95755 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 95694 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 95633 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 95572 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 95511 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 95450 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 95389 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 95328 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 95267 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 95206 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 95145 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 95084 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 95023 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 94962 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122967-122084 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMXD010000002.1 Escherichia coli strain 18-47-58 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 122966 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 122905 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 122844 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 122783 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 122722 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 122661 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 122600 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 122539 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 122478 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 122417 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 122356 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 122295 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 122234 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 122173 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 122112 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //