Array 1 135579-134633 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWRH010000003.1 Ralstonia pseudosolanacearum strain T2C-Rasto 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 135578 29 100.0 32 ............................. GACCGCTTCACACCTGGCGAGCGGCGCGCCCA 135517 29 100.0 32 ............................. CATTCCTGCGCGAATTGCTTGCTGCGCTCGAC 135456 29 100.0 32 ............................. GGAGATGGCACCACCAATGATACAGCCGCCAT 135395 29 96.6 32 ............................T GATTGCCGATATCCCTTTGCTGCCCATCCTCC 135334 29 100.0 32 ............................. TCGGGGACCTGGCTGCCGTAGTCGCGGCGCAT 135273 29 100.0 32 ............................. ACCGGAGGCGTCAAGAGCGCGTCGGCAGCCGG 135212 29 100.0 32 ............................. ACAGTCTGGACGGCGCACTGCAGCTTGCTGCC 135151 29 96.6 32 .....A....................... CCACAGCAGGAGTTCCGCGCGTTCCTTCTCGC 135090 29 100.0 32 ............................. CCGAAGGACGTGGTCGACTACACCCGCGCGCT 135029 29 100.0 32 ............................. GCGCCAAGCACGGTGCCCGGGTCCACGCCGGG 134968 29 100.0 32 ............................. CTGGCCGAGGCCTCGGCCATGTTGCTGGTCAA 134907 29 100.0 32 ............................. CGTTGCGTCCAGATCGATCTTCTCGCCATAGC 134846 29 100.0 32 ............................. ACCCGCAAGACGCTCACGGCGGACCAGAAAAG 134785 29 96.6 33 .................A........... GGGGATGCGCGGCGTCTGTTTGTGCGGTTGGCC 134723 29 86.2 32 A.......T.........A..G....... GCTTAGTCGCTGAAGCTTGTCCAGATGATCGT 134662 29 86.2 0 ............C..........ACC... | T [134647] ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.6 32 GTGTTCCCCGCGTATGCGGGGATGAACCG # Left flank : TCGCATCATTCCCGCCATCGAGGAGGTGCTCGCAGCGGGCGGCATCTCGCCTCCGGAGGCCCCCCCGGAATCCGTGCCTCCCGCCATTCCCAATGCCGAGCAGCTCGGCGATGCCGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTGGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGCTGCTGGAGGTGCGGGCCGGCGTGTACATCGGCGACGTCTCGCGGCGTACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTATGAATTCCAGACACTGGGCGCCAACCGCCGGCTTCCAGTCGAATTCGACGGGCTGCAGCTCGTAGCCTTTCAGCCGGCGGACAAACCTGTTCTTTGACAACGCGAACGATCGGTACCTTTTCGGTGGTGGAATTTTCGCTTCCTAATCAATAGGTTGGGTTAAGT # Right flank : CCGACTCCGCCGCAGGACAGGATCAGCCCGCCAGCCCAGCCCGCGCCGCAACAATCGCCAGCCTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGAAGCAACCGAGCCTTCCAACGTCAGCACGGCGTGCACGTCGTCGCCGATCAGGTTCGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGTTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGGGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATATCGGCGAAGATGCGCAGCGTGTCGACCACCGTGTCGACCGTGTCGAACAGCGGTTCCTTGTCTTCCTGGTTGTCCTTGTTGTAGGCCAGCGGCTGGCCCTTCATCAGCGTAAGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 146440-144945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWRH010000003.1 Ralstonia pseudosolanacearum strain T2C-Rasto 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 146439 29 100.0 32 ............................. GGCGCTCTGGTTTGTGCTTCCGGATATTGGCA 146378 29 100.0 32 ............................. TCGAACGACCGAGTGCGAATATCGCCGGTCTC 146317 29 100.0 32 ............................. CCACAGGGGCATGCGGGATAGAGTGACACCCC 146256 29 100.0 32 ............................. CGGCTCAACGGCATCCTCATGCGGCGCGGATA 146195 29 100.0 32 ............................. GAGGTATTGCCGGTGTCCTGCTTGGCGGACGT 146134 29 100.0 32 ............................. GCCCGACCGTGTCAGCGGACTTCGAGGGGTCG 146073 29 100.0 31 ............................. CAATACCTCGCCTAGGGCAAACCCGCATACC 146013 29 100.0 32 ............................. CTGGCGAACCATCTGGCGATGAACACGGAACT 145952 29 100.0 32 ............................. GCGCTCGCCAGCGGGACGCCGGCCGCGCATCT 145891 29 100.0 32 ............................. ACGATCGGATCTACATGGGGGCATATTTCTCT 145830 29 100.0 32 ............................. ACGCTGATGGCCATGCGCGAGGGCATGGGCGA 145769 29 100.0 32 ............................. CCGCTTGGTTCCGCGCAAAGAGGTTTCGGGTA 145708 29 100.0 32 ............................. GCAGTGATGGCGAACACGGCCAGCACTGCCAG 145647 29 100.0 32 ............................. CTGGGAAGCGGGCTGAACGGCGGCGAACTGAT 145586 29 100.0 32 ............................. GAACTTCCACCATGTACACCGCGATCGTTTTC 145525 29 100.0 32 ............................. GAATGAATCTGCGGACGGCGACCGCGCGGAGC 145464 29 100.0 32 ............................. TCGTCCAGGCCTTCACCATCCATGTTCGTGAG 145403 29 100.0 32 ............................. TTTCGCGCGGCGTCTCGGATGCAACGCGCGAA 145342 29 100.0 32 ............................. TTTCGCGCGGCGTCTCGGATGCAACGCGCGAA 145281 29 100.0 32 ............................. GCCATTGCACATGGCCGAGCGGCCCCGCCGCT 145220 29 100.0 32 ............................. TTCGGCGCGGCTGGTGCGGTAGCGACAGGGGC 145159 29 100.0 32 ............................. CTTCATGGGACTGTCAGACGCTGGAATCCCGA 145098 29 100.0 32 ............................. AACTCGATTGAGGCGTACGGCGCCTCAGGCAA 145037 29 93.1 32 ............CA............... CCCATGATCTGAAACAGGCCCCAGCTCGCCGA 144976 29 86.2 0 ............CA..........T...A | TC,A [144948,144952] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.2 32 GTGTTCCCCGCGTGTGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAATACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGCCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCATGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCCATCGACGACCTGGAGGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACCATCGTGCAGTACCTGCAGTTCGCGCGCGAGTTCAACAAGCTGTTCCCGGGCTTTGAGACCGATATCCACGGGCTGGTGGAGGAGGAGATTGAGGGTCGGGTTGGGTACTTTGTTGATTGCGTGCGGTAGGGCGTTGTCGCGAGCTTTTGTCCGGTGGTAGATCGGTAGATTTTTTGGGGCCGGATTTTTGCTTTTGGATCAGGGGTTTGCGGTAAGT # Right flank : ACCAGCCCCAGTTCGTGCGCTGCCTGCAGGGACCAAAGAAAGTCCGCAGATTAATCCCTTTCTAATCCATCAATTGGATAGTCTTTATATCTACTGAAGTCACCCAAGAAAACCAAAATAAATACCCGCAAGACTGCTACGATCCCCAGCTCGGGAGCAGGCACAGATCGTCAAATTCATTGGCATCAAGAACATGCATCAGGCTGACATGGGGAAAGGGGCGTCGCAATACTTTGCGTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCGGCCAGCGATATCACCTGCTTGCCTTTCATGCACTGGATGTCGCGGCCTGCGGGGTGGAGTTGCTGCGACTGCCCCGGTTTACTCTTGCGCCGTTGGCTACGGAACTTGGCTGGCCATTGCAGGCCGTCAACAAAATATTCGCGTGGTTCCTCGCGCTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCAGGGTTATCTCCCGATCTCGTCTCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //