Array 1 2568-44 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYS01000011.1 Acidianus ambivalens strain DSM 3772 NODE_11_length_3245_cov_2.37781, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ==================================================== ================== 2567 24 100.0 36 ........................ AAACTCTAGAATTGTTTTTAAATTAAATAGTGATAA 2507 24 100.0 37 ........................ AGCAAAAAGGAGATTTTGAAGTTATGGAAGGATAAAA 2446 24 100.0 35 ........................ TCTTGCTGAGATGTCAATGGGAATTGGAATATTCT 2387 24 100.0 35 ........................ TTCGTCCCAGGTCTTGATGTAGCTGTAGACATTGC 2328 24 100.0 35 ........................ AAAAATCTTGAGAAAAATACTAATAGACGACATAA 2269 24 100.0 34 ........................ GTTCATGGGTTTTCACCCCTGCCCTTTTGGGGCG 2211 24 100.0 35 ........................ ATGAGTAGAGGAGACTGTGAAGTAGTTATTTGAGC 2152 24 100.0 37 ........................ GGAATACAGTTGGCGGTAAGACTCCATACGCATCAGG 2091 24 100.0 35 ........................ CTAGACTCACCCGCATAATAATAGTATCCACACTT 2032 24 100.0 34 ........................ TTACTAATAAATCTACTGTGCTTTGAAAATAATC 1974 24 100.0 34 ........................ TCAATTGAGCCCATTCTCTTTGTTAAAAAATTGT 1916 24 100.0 34 ........................ TTGATTTTAGTGCATTAAGTATTTACGTTAAAGA 1858 24 100.0 35 ........................ CTGCGTTAGTATAGGGCGGTATTTTGTATTCCGCT 1799 24 100.0 38 ........................ TGGAATTATGACTTTGTATGTTGACCTTCTGTGGTCAT 1737 24 100.0 35 ........................ ATTCTTGATATGTATAAATTTCAAAGACTTTTTGC 1678 24 100.0 34 ........................ CCAATGTCTATCTATCTGCCATATATAACCTATT 1620 24 100.0 35 ........................ ATAACATCAGCTACACCCTCTACACCTGTCTCTAT 1561 24 100.0 34 ........................ AGCCATTGTCGTAATATGAAGCAGAATTGCATCA 1503 24 100.0 52 ........................ TGGAATTGGATAAAGTTATACAAACGAATCTCAAGGAAGCAGAATTGCATCA 1427 24 100.0 38 ........................ GTGTAATATGATCCCTTTCCTATTAAATTCCTAAGAAA 1365 24 100.0 36 ........................ GATTTACGACGATTTCGAAAAAACTTTTGAGAAAAG 1305 24 100.0 34 ........................ GTGAGATAGATATATACTATAATATAGTAACGTA 1247 24 100.0 35 ........................ TTTAGTTCGGCATTTAGTAATGATGCCACTCAAAT 1188 24 100.0 35 ........................ AAACCCATTTTATATCAAAATTTATGTATGCGTCT 1129 24 100.0 34 ........................ ATCACGGGCATCTAACTCAGCTTGTAACGCCGAT 1071 24 100.0 35 ........................ TGCACCGACTAGTGACGACGGTAAATCTGGAGAAG 1012 24 100.0 33 ........................ TTGCATTCTCTATCTCTAAAACACATTTCCTCT 955 24 100.0 34 ........................ ACAACAAATACATATTGATAATTTATTCCGAAGA 897 24 100.0 33 ........................ AAATTTCTCGAAAAGAAAATAAAAAGGTTAGAG 840 24 100.0 41 ........................ CAATGAATTGAGTGAATTAGTTGAGAAATATCAGAATTCAA 775 24 100.0 36 ........................ GAAAAATCTTCAAGTAGGTGACCCGTCCGTGATTCT 715 24 100.0 35 ........................ CTCTGTGGGCTTGCATAATAATTGACCATCGTCAG 656 24 100.0 34 ........................ GATGGAGAACTACTTGAGAAAGAGAAAAGGATAA 598 24 100.0 37 ........................ ACTAACCTATTAGACATAACTAATGACAAAAATACAA 537 24 100.0 34 ........................ ATGCAATACGCTTAGCGCTATCATGAAGACTCCC 479 24 100.0 35 ........................ CTCTGTGGGCTTGCGTAATAATTGACCATCGTCAG 420 24 100.0 34 ........................ AGGAATAAGAGTTAGAGAGCCATAAAAAGAAAAT 362 24 100.0 36 ........................ ACTCGACTCCGACGAAAAGCGCTGTTAATGATAACG 302 24 100.0 34 ........................ ACAAAGCAAAAGGTGACCAGTGATGCAGATAATT 244 24 100.0 35 ........................ TGTACTGCCCAAAAGTCATCACGTAACGTAAATCC 185 24 100.0 35 ........................ GACTTTGAGAAACTGAGAGAGCATGCAAAGACATA 126 24 100.0 35 ........................ CTTAAAATTTGCTTTATATCATCAATGCTCTTTAT 67 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ==================================================== ================== 43 24 100.0 36 CTTTCAGTTCTTCCTTATTTCAAC # Left flank : TGTTTTATGGTTACAATTTCTGTAGTTCCTCTTTCCGTTAATCTCCAGATGACGGAAGGCCATATATTTACTTTTTGACTTTGCAGAATATAGAAAAATTGAAACATGATGAAATACGATACACAGTAAGATGATTATAGAGTAATATAAAAATCCCAGCCTCGTCATTTTAGCATAAGACTTGAAACTCCTAAGTGCTTTGTGGACTAGTTGAATTTTTGTCGATCTTAAACTCACTAGATCAAGATAAATTCCAAACGTTTAGTTAAAAGTAAGTTTAACGCCATTTCTGAGAAAAATTGAAGTAACCCACAAAGCAACTCCTAAGTTAAGACTAGAAGTTGAGAAGAAAAGATGAAAAATTATGTTAAGTAGAACCATATTAGGAATGACAGGCTCAACTTCCTCATAAGTTGGGAAAAGAGAACGACTTCATAATGGGCCTATTTCTTTGTAAATACATATAACGTTAAGCCCAATAGTACAACTACAAATGAAGA # Right flank : CAGGTTTGCCCCACGAACATCATATCCTCCAGTTACTTTCAGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGTTCTTCCTTATTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 21-926 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYS01000025.1 Acidianus ambivalens strain DSM 3772 NODE_25_length_944_cov_1.85924, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 21 24 100.0 35 ........................ TTGTATATGTTCATAACATTATTACCTCGCCCGCC 80 24 95.8 34 .......................C TTAATGTAAAAACAGCAACAAGAATTAAAAAAGC 138 24 100.0 34 ........................ CATAACGAGTTATCCAACAAAATGTAAATATGCT 196 24 100.0 35 ........................ CATTTCGTTTTTATTAAAAATGCAGAAATTCTATT 255 24 100.0 34 ........................ ATGACGTTATGGAGAATGTTGTTAGATATTTAAA 313 24 100.0 35 ........................ CTAGATAATCATGAACTTCTTTTTATTCACATTAA 372 24 100.0 36 ........................ TTTCCTCAGAATGAAAGGAAAAGAGGACTTATTCTT 432 24 100.0 34 ........................ CTTTCCATTTTTTATCATTCGCATCGAAATATAT 490 24 100.0 35 ........................ TTCTCTTCTTTTTATGATGCTAAACAGATTCTTAG 549 24 100.0 35 ........................ GACACCCACACTGTGGTATGTGGAAACTGTTTCGT 608 24 100.0 33 ........................ GATCAAGGATGGAAGTAGCCATTTCCAGTTCGT 665 24 100.0 35 ........................ TTATTTCATGTACCAAAAACTCCTTTCCTTTTCCA 724 24 100.0 35 ........................ CAATTATACGTTCAGCTTCGTCTTTTTTACTTATA 783 24 100.0 37 ........................ TACGGAGGTCCGCTATCTCTATCGTCGACGGGAGGCA 844 24 100.0 35 ........................ ATCAAAAGTACAGCAGTACAAACAACAAGTACAGC 903 24 95.8 0 .......................C | ========== ====== ====== ====== ======================== ===================================== ================== 16 24 99.5 35 GTTGAAATAAGGAAGAACTGAAAG # Left flank : GGAGTATGGTAGACATTAGGG # Right flank : CAACATTAACGACTGGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATAAGGAAGAACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [18.3-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 705832-709299 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYS01000002.1 Acidianus ambivalens strain DSM 3772 NODE_2_length_780758_cov_64.2664, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 705832 24 100.0 34 ........................ TTTAGGAGTGAGCGTAACCCCACGAGAGGAAAAA 705890 24 100.0 34 ........................ TTAAACAGTGGAGTGGATGAGGCGTGTATAGCAA 705948 24 100.0 35 ........................ TAGAACCTTGCAGAATTCCCCCTTTCGCATGATGC 706007 24 100.0 34 ........................ AAAAAACCATCCAAGCCTTTGACCAAATGATTAA 706065 24 100.0 33 ........................ GTGGAGAACCGCCTGGTAGTGGAGATGTTGGGT 706122 24 100.0 35 ........................ AGTTTTGAATCTAGAGAGAAAGAACAAGATTAAGA 706181 24 100.0 36 ........................ GCTCATAGCCTGCACCTGCACTAGCTTTCAGTAAAT 706241 24 100.0 35 ........................ AAAATAGTAGGAATGCTAACCCCAATTCCAGCTTA 706300 24 100.0 34 ........................ TACTCGTAACCGAACTATAAAGGGAAGAAGACGG 706358 24 100.0 37 ........................ GTATGACAAAATCCCTTCTAATGCACTATAAAAACGA 706419 24 100.0 34 ........................ CCATTTTTTATCCCCAATAAATACTATGATTTCA 706477 24 100.0 35 ........................ ATATCTTAAACATCTCCACAAATCTTTTATCTAGT 706536 24 100.0 35 ........................ CCCCCATCAAGAGAAATAGAAAAAGTAATATTTGA 706595 24 100.0 33 ........................ TTTTTCCCTGAAGTTGTAGTTTTCTCTACCACC 706652 24 100.0 33 ........................ ACGGATTTGTTACACCAAGTGCTACCATTTCTG 706709 24 100.0 35 ........................ TTCAAAGAAAAAAGGCTTTTTCACCAAAAAAGTGA 706768 24 100.0 35 ........................ AATTGGGGGTATGTGCACATGTGGTGGAATGATTT 706827 24 100.0 35 ........................ GGATAATATACTCCAGGGAATTTTGAGAAGTAAGT 706886 24 100.0 30 ........................ AAGGTCTAGCTACTGCTTATAAACTATCAA 706940 24 100.0 35 ........................ TGGTAGGAGTAATCGTAGCGTTATATATAGCTAGA 706999 24 100.0 35 ........................ TATCGATTTTGGAGATTACTTAATTGTGGTAGATG 707058 24 100.0 34 ........................ TTTTTGACGCGACGAATTTGCGGAAGTATTTTGG 707116 24 100.0 34 ........................ AGCTTTAGCATCTTCTCGGCATAATTCTTGTCTC 707174 24 100.0 37 ........................ AAATGAAAGTCGAAAATAAGTCTCAAAAAACACAAAT 707235 24 100.0 35 ........................ GGATATACCTCATGGATTGGTATTTTCAAAAAGTA 707294 24 100.0 35 ........................ AGAATTCCACGCTCTTTTGCTGTATAAGCTCCTTT 707353 24 100.0 34 ........................ TGGGGAAAAAGATGGAGGTAGAGGTAAAAGAAAT 707411 24 100.0 35 ........................ TGCAAACGTTACAATTATAACGCCCATTTACAAAC 707470 24 100.0 36 ........................ GAAATATGTTTATATCTTCTCGTTATGTACATATCT 707530 24 100.0 34 ........................ TACCAGGCTATTATGCCGTAGGAGTCTGGTTTGA 707588 24 100.0 34 ........................ CGAAAGTGCTTGGTGACAAATTTGCATATAAGAA 707646 24 100.0 36 ........................ ACCCACGTGTTATCGATTTGGTAAAGAGAATCGCTG 707706 24 100.0 35 ........................ TACTGTTGAAGCCCCTATTCATTCTCCTTATTATT 707765 24 100.0 34 ........................ ACAAATTAATCAGTCAACAGTGAGGTGATATAAA 707823 24 100.0 35 ........................ GTGAGAAGGAAGAAGATAAGCATGGTATCGAATTC 707882 24 100.0 35 ........................ GGATATTCGTAAGTCACAGTAGGGCGTTTACCCAA 707941 24 100.0 37 ........................ AAGCTTACGCGAGGAAGAGCGATGTAATGAGTTTGAA 708002 24 100.0 32 ........................ AACTACGACTCTAACGGTGGTGCAGAGAATAA 708058 24 100.0 34 ........................ TAAAAACACGACATATATTGAGGCGGGAGTTAAG 708116 24 100.0 34 ........................ AATAGACATGTAGGAATTATCTTAGTATTTGTCA 708174 24 100.0 35 ........................ AAAAATCTTAAGAAAAATACTAATAGACGACATAA 708233 24 100.0 35 ........................ TTTTAGGTACAACCCCCTCGTTTGGATGATCACTG 708292 24 100.0 34 ........................ CCACTGTTATAGCCCGCCTTCAGAGGGGCTAAAT 708350 24 100.0 30 ........................ CTGTAGAAGACACTGTTTCCGTTTCCGAAA 708404 24 100.0 34 ........................ GACAGAATCCACGCAAACAAGAGCGGTAACATAT 708462 24 100.0 35 ........................ CACTATCAAGTCGTTTAACACACTGGCGTAAACAG 708521 24 100.0 35 ........................ TCATAATTTTTTATTCATCATCCTTCTCAATTTTG 708580 24 100.0 34 ........................ TACTATCGACACCGTTTGAAGTACAGTACAAGGA 708638 24 100.0 34 ........................ TCCTAATGAAGTAAAGGTGATATTTTTTGGAAGG 708696 24 100.0 34 ........................ TTTCTGAAGTTAAGCAAAGAGAAGCTTTAAAGAG 708754 24 100.0 35 ........................ CAATTTGATCAAATAAGAGAATATGCAAAGAGGCA 708813 24 100.0 34 ........................ AGCCTGGATAACAGTTCATCTCCAATTGAGTTGA 708871 24 100.0 34 ........................ CATACTCTCCTTTGATGTGGACAAGAAGCGTATT 708929 24 100.0 34 ........................ AATATGAGAAGTGCTGCAGAGAAGAGGAAAATGT 708987 24 100.0 34 ........................ AGTAATTTCTATCAGTTAACTGGGGAGTTTTTAC 709045 24 100.0 34 ........................ TATTAAAGGGCAAACTTAGAAGAACTTTGAATAG 709103 24 100.0 34 ........................ TTGATATTCGTTTGTGGTAGGATAATTGTATTCA 709161 24 100.0 33 ........................ GTGGTTGAGCATTGATTTCTCGGACTTGGGCTT 709218 24 100.0 34 ........................ ATAGAACTTCTAAACTCTTTTTCTTCGCTTCCTG 709276 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 60 24 100.0 34 CTTTCAGTTCTTCCTTATTTCAAC # Left flank : CCCCATACATGGATTATCCCGACCTTCTAAAATCCATTCACTTAGTTTTTCTGAAAGAATTGAGGCTGATTCTCCTAAAGTTTACATCTGCCTTCCTTTACGGCTTGTTGATATTCTTGAGTATTAAACTTCAAAGGACTTTAACAACTTCCTTGATTGAACTCCTTCATTTCAGTCACTTTTCCAACCCTTTCTCTTAAATACTAAGGAAGATGAGTCAATTACTCTCACGATCTTCTCTTACGGATTTTATTGAGAAACCTTCTTCACTAGGTTTAACGTCCTTAAATTCCTCAAAAAGAGAAAATAACTGCAACTTTCTTGTAGTAACATTTTTTTTCCTGATGAAGAGGTTGATATTATTAGACCAATAATGATAGAGTGCATAGGCCATGAAAATCATTGCCATATCCATTGTCATATAAGCAATATATTAGAAAATTATTTTGATGTAGATCTAACAGTGTAATAACTATGTTACTAATCTGAGTATAAATCGT # Right flank : CCGTTCGTCACTTTTCACGATTTTTTCACGTGCTTTTAGGGGGTTGTGTAGATTATCTTATTTACTCCTTTATAATAAACCTTACTTTTCATCAAAAACTAGGGAAGGCAATGTAGAAAAAGTTTATTTCACGTTATTTTGAAAGTAACTTTTCAACACAAAAGTTTATAAAGAGTATTTATACCCCGAAAAAAGACGTCAAAAACTCTACCTAAAAATCTACACGAAAAAATCTCCCACAATAGAAATAATTCCTAACTCCCCTGTTTTTAGAGAAAATTGAAAGGGGATAAATTGACAAAGTAGATAGAGAAATACTAGAGAAGAAAAAGAAGAGAAAATTGAAAGAAAGAAAAGTCAAAAGAAGGTGAATTGGAATAATCTACATTTATTGTTAAATAAGACATAATTCCTAATTCCCCTGCTCTTCACGAACAATCGAATGAAAGAAATCTAGGAAAATGACTAGAAGTAGATAGAGAAATTCATCCCCTCACTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGTTCTTCCTTATTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 78-570 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYS01000034.1 Acidianus ambivalens strain DSM 3772 NODE_34_length_577_cov_2.22444, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ==================================== ================== 78 24 100.0 34 ........................ ACAAATCCATTTTGGAATTTTGCAATAATCATAT 136 24 100.0 34 ........................ TTTTTCGTCTACAACTTCAATTACTTTCTCATCA 194 24 100.0 35 ........................ TCTCAAACTTTGTTCCTTCTAGTTTATCTGCAACA 253 24 100.0 36 ........................ CTTCAACAGGGGAGTTTTGAGAAGACCGAGAGGGTA 313 24 100.0 34 ........................ TATTTCAACTAACAAAAGCGTTGCTGCATACTGG 371 24 100.0 35 ........................ TTTTTATGCAATCGAGAAATTCCTCCTTTGATTTA 430 24 100.0 34 ........................ GTTCCATTTATTAATATTCAGTCTCTAACACCCT 488 24 100.0 35 ........................ GAATTCACTTTTTATTTTCAATTTTCTATAATTAA 547 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ==================================== ================== 9 24 100.0 35 GTTGAAATAAGGAAGAACTGAAAG # Left flank : TTTTATCTTAGGATTAAATAAGATAATCTACACAACCCCCTAAAAGCACGTGAAAAAATCGTGAAAAGTGACGAACAG # Right flank : GATAGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATAAGGAAGAACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 308-514 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYS01000037.1 Acidianus ambivalens strain DSM 3772 NODE_37_length_531_cov_0.992574, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 308 24 100.0 39 ........................ ATTTTCTATTAGATTGTAACGGCTCAATATTTGCTAATT 371 24 100.0 36 ........................ TAAGTATATGTTAAAGACAAAAAAAGATATAAAAAT 431 24 100.0 36 ........................ TTTTTGTCATATCAACCTTAACGAGCCTTATTATAC 491 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 4 24 100.0 37 GTAACAACACAAAGAAACTAAAAC # Left flank : ACACTAAAGTATATAGTACATTAAAGTATAAAAAATTTCTAATAGAAATTGTAGACAATATTAGAGATTATTAGAATATTATGGCTAAATTTGAATGGAATTCTTATCTATTCTATAAGTAATAAATAATTTGCCTCTCTCTTCACAATCCCTGTCTTTCATTGATACTGCTCTTCTTTAACGTGAAGAATATAGAACTAAAATACGGCGCTTCTTTAATTTTTCTATTACTGAAAGGACTAGATGTGGGGTTTTTAATAGTCATGTGCTTCTTTAATTTTTCTATTACTTACGCGTAAACTTTCTCG # Right flank : ATATCGATAATGGCGGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAACACAAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 1-487 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYS01000038.1 Acidianus ambivalens strain DSM 3772 NODE_38_length_490_cov_2.02755, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================== ================== 1 23 95.8 35 -....................... CTGCTATCATCGATCCTACAATTAGGAATAGGAAG 59 24 100.0 34 ........................ ACAAACGTATCGTGGCACATAAAATATAAAGTCC 117 24 100.0 35 ........................ ATGGGGAAGAAGAGTGATGAACATGAGTGAACCCA 176 24 100.0 33 ........................ CTCCTCCAAGTGTCACTACCGGCTTCAAGAACT 233 24 100.0 33 ........................ TGAACACAGAGCTTTGTTCCATTGACCTGTATC 290 24 100.0 34 ........................ TTAGGGTTGAAGGAGTCATTTGGTATAGGCGTTC 348 24 100.0 34 ........................ AGGCATACGGTCTAAGTTTAATTCCATTAGCCTT 406 24 100.0 34 ........................ TGACTGGTTCGCTAGAGGAGACAGTAGAATTCGG 464 24 91.7 0 ..............A...A..... | ========== ====== ====== ====== ======================== =================================== ================== 9 24 98.6 34 GTTGAAATAAGGAAGAACTGAAAG # Left flank : | # Right flank : TTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATAAGGAAGAACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 59180-59330 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYS01000001.1 Acidianus ambivalens strain DSM 3772 NODE_1_length_1228068_cov_64.935, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================== ================== 59180 23 100.0 42 ....................... CATCACTCTTAGAAGCAGTTAAAATACCTAAGAACTTTATCT 59245 23 100.0 40 ....................... TCTAAATTAGAAAAGTACAGAATTCCAACCAATGATAACT 59308 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ========================================== ================== 3 23 100.0 42 TTCAATCCCTTTTGGGATGCAAC # Left flank : CAAAATAGCCTGAATCTAATAATTTCTTAACCAACTCCTTAGCTTTACTTATTCCGTATTTCCTGCATATTACGTAAGTTATTTCAATTAATGTTAAGTTAGTAATTACAGGCTTTAATTTTCCATCCTTGACCAATTTAAGAAATTTTTCACCCAACTCAGATCCTTCTAAAACCTCAACTATTAATCCGGTATCAACAACTACTCTCATCTTCTCTTCTCGACCTCTCAAATTCTTCCCTTATACCTTTTGCGGAACCCAAGAGGGAAAAAAGTAACTGCGGGTCCTTCTTTAAGTTCTTATTCTCTTCATAAAAGGATATTAAATATTCTACAGTATCGTTCAGACTAACCCTCTTTCCCTTGTTTAACTGCAGCTCAGCTGAAATCTTAACCAATTTCTCCTTAACTTCCTTGCTAACCCTTATAATTTCACTCATAAGATAAACTCTACGTATATGTATATAAAGTTTACATTGTATACACTACTTAGTCGATTC # Right flank : CTGTTTGTTTTATTAACCTCTGTCCTTATTTTCTCTTTTCTCATTAATAAGTTTTCATTACACCTCTTAGTTCTTCATGCGACCGATTTTCCTTGTAATTTTAATTTCGTAATACGGTCGCATGGTCTTTTTCACTAATTGAAAGAGAAAATGTATTTATAAGGCTTCAATTCTTCTTTTGATTCTCGCAACGGTCGCATTGAGGCTAAAACTTTATCGCTTTTAAACTCTTAATAAAACTCGAACCTTTTCCTACTATTTATCTGTATTAAACAATTCAAAGATTATCACATTCATTGAATTATATTTAGATTGATGCCCTTAATATATTAACTATTTTTAAAATTAGGCACAGTTATATTTTTAAATAGATTTTTAAACATCGTATTTTCCCTTGTTTATTCCTTCGCGTGGAAATAAAAATCGTTTATTATCGTGTTAAATTAATAAACAGTTAAAACTTTCTATCCAGCATGGGAGTGTTTTTACACTCTTGTAAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAATCCCTTTTGGGATGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 62623-63540 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYS01000001.1 Acidianus ambivalens strain DSM 3772 NODE_1_length_1228068_cov_64.935, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 62623 25 100.0 39 ......................... AACTTTATACCCGCATCTTTGTCAATGTACACAAGTGCA 62687 25 100.0 40 ......................... TATGACAGTTGACAAGAAATATAACATCGTTTTTACATAT 62752 25 100.0 40 ......................... AAAATCCACTTCTGTCCAAGAGATACTATGCTTATTAACG 62817 25 100.0 38 ......................... ATGTATGTTACGTGTTTGCCGTTGACGGACAGTACTTT 62880 25 100.0 39 ......................... TAACATATTTGTCAACATAGGGTTTCGAAATCTTAATCT 62944 25 100.0 38 ......................... TTTACTTATACAAAAAGAATACGAACTGGAAATGGCTA 63007 25 100.0 38 ......................... GTGTGTCACAAACAGACAACTTACTGTTATCCAACGTG 63070 25 100.0 38 ......................... TAATAACTTAGAGATAAAAAATGAACTGAAGATAGAAC 63133 25 96.0 38 ..A...................... TTTTCATCGCAATCACATTCTTCAAAAAATTCATCTAA 63196 25 96.0 39 ..A...................... TTGATAATTATTGCGGCTATACATAAAATACTTCTAAAA 63260 25 100.0 41 ......................... AAATTATTCCATCAGTATAATTATTTGCATAATTTATGTAT 63326 25 100.0 40 ......................... CTCTCCTTCTTCACGTTTCATCAGTACGAAATTAAAACAT 63391 25 100.0 39 ......................... ATTTCACCCGCCGTCTTTAAATCCGTATTTGTATGCCTA 63455 25 100.0 36 ......................... TTGACATATTTTTTTACTTTGTCAAATGGCATATCA 63516 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================= ================== 15 25 99.5 39 GTTGCATCCCAAAAGGGATTGAAAG # Left flank : TTGTTAAAAATTTTTATCATACTCGCATATTCACTGTTAAATTTAAAGGAATTTTAGTATTCTGTTTCAGAAAAAATATTTTTAGTTATACGACGTTATTCCGATGAGGGAAAATACGTAGTTTAAAAATTAGCTTAAAAAGATAGCTACACTTGAAAGTAAATAGTATTAAATAAAATACGAAATATTAATGAATAAAATATAACGAACGGAAAGGATTTAGAACCGTTTATCGTGGATAGGTAAACCTAAGAGTTATATTTTTATTAAGAGTTTAAAAGCGATAAAGTTTTGGTCTCAATGCGACCGTTGCGAGAATCAAAAGGAGAATTGATGCCTTATAAATACATTTTCTATTTCAATTAGTGAAAAAGACCATGCGACCGTATTACGAAATTAAAATTACAAGGAAAATCGGTCGCATGAAGAAATAAGAGGTGTGATGAAAACTTATTAATGAGAAAAGAGAAAAATAAGGACAGAGGTTAATAAAACAAACA # Right flank : GGATAATATATCTTTAGCGATTCCTTTTAATTTTAGAGTTGAAAAACTAATCCATGTAACCACGAGTTACCTGAGCTAGCTAAAAGTTTGCTAACATGTTCAAGAATGTTTAGAGCTATTAGCTCTGCTAGGTGATGAAATTAACAAGTAATCATTAGGTATTACAATGTACTAAGTAGTGCTAGTTATTATTTTATTTATTTGTTTAGTTAACTATACTAATCTTATAGACTAAGAACTAGAAATCGTAAATAATCTTAATTTATATTAATATCATAAATCATATAATAAAGAGGTAATAGAATGTTTTATTCGTTTTTCAATTTAATTTTATTAATTTTATCAAGAAAATCCTTTAATTTACAAAAAGAATCGTCTAATAAACGCTTATATACATTGTTTATAACGTTTAAATCAGAAGGTAAAATAAAGCCTCCATGTGCAAGAAAAGAATTATTCCTAATGAAATCCATTAAGCTCATAGGAACATTATTAACACC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCCAAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 3 78366-77520 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYS01000001.1 Acidianus ambivalens strain DSM 3772 NODE_1_length_1228068_cov_64.935, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================= ================== 78365 25 100.0 39 ......................... CATTCGGATATGAGCCATGGGCTTTTTGCTCACCATATT 78301 25 100.0 36 ......................... TTAGAGATTCGTTTGACTATAGAGAATGTACCTTAC 78240 25 100.0 38 ......................... AGTAGATAGAATATCGGGACTAACGAAACTAGTGTCGC 78177 25 100.0 39 ......................... ATCGATTAAGTTCTCTCTATTTTTCAGTCTGTAGATTCT 78113 25 100.0 39 ......................... TTTTACTTGAGAAGGAGAAAGGGGTTCAACTAGGACTAG 78049 25 100.0 38 ......................... TAATTGGTTGTTATATTATAATAATAGGAATAATTGAG 77986 25 100.0 38 ......................... GTTGTTTTTAACCCGAATTCGTCCCTATAAGCCATTGC 77923 25 100.0 39 ......................... ATAATTTAGTTTTACAGCTCTGATGATATATCTATATAT 77859 25 100.0 39 ......................... TTAGACTGGGAAGAAGAACTGAGCGAGGACTTCCAACAA 77795 25 96.0 38 ........T................ CTGAATTGTTGATTCATTTCGCATTCTACAACTAATAA 77732 25 100.0 37 ......................... TTGTTAGTCGTCCCTTTTACTATCGTCGGTGGATATC 77670 25 100.0 38 ......................... GTAAACTGGGGTGTTTATTCGAAGTTTAGAGACTGGTG 77607 25 100.0 38 ......................... AATATAGCAAGTTTGTTATCGTTATTGTTCAACCTTAT 77544 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ======================================= ================== 14 25 99.7 38 GTTGCATCCCAAAAGGGATTGAAAG # Left flank : AATAAAAAGTGTTCAATAATACTGCGTATAAATGTAAATTATATAGCTTTATTCTTGATAAAAATTTTAAGAAAACGATTTTTAGTTTTACGCTGTTAATTCTGTGAGGGAAAAATCGAGACTTATAAATTCTTTTATAAAGATATTGGCTCCTTTTTATAAAAAGCTATTATTTATTACTCTTTATTTTCTGAATAAATTCTTACGAACGTAACTATTCTAGAATCGTTTATTGACGATAGTTTAACCAAGATGTTCGAGTTTTATTAAGAGTTTAAAAGCGATAAAGTTTTGGTCTCAATGCGACCGTTGCGAGAATCAAAAGAAGAATTGAAGCCTTATAAATACATTTTCTCTTTCAAATAAACAGGAAGACCATGCGACCGTATTACGAAATTAAAATTACAAGGAAAATCGGTCGCATGAAGAACTAAGAGGTGTGATGAAAACTTATTAATGAGAAAAGAGAAAAATAAGGACAGAGGTTAATAAAACAAACA # Right flank : CATGAATAAAATAATAAATTCGTAAGAAGGAAGTATATATTATGATATCAGGGACTACAGTAAAGCACTTTGCTTACTGCCCTCAAATAGTCAGGCTTGAGGCCATGGGTTTTACCGAGAGAGTCACTGAGGCAATGCGTGAGGGGCTAGAAGTTGATAGAGAGAAGACTGTTAATTTTCTTTACGGAGTTCTTAAGCCTTTGAACATCGTCGCTAAGCCTATATTTAGATATAATGATCTTGTAGGCTCTCCGGATTACGTATTATTTTTCAACAACTACGTAACTCCTCTGGACATTAAGCAGGGAAAAGAAAGGATTGACCACGTAATGCAGATTCTTTTTTACCTTTATATCATGGAAATGAAAGGATTTAACGTGAAGGAGGGGTTATTATATTACGTCCAACAAGGGAGGTTAAAGAAGGTAAGGTACTCTTTCAGGGAGAGGAATTATGTAGCTAGGATCATAGATGAAATAAGGGACGCAATGAAAGGTAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCCAAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 4 83923-85348 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYS01000001.1 Acidianus ambivalens strain DSM 3772 NODE_1_length_1228068_cov_64.935, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================== ================== 83923 25 100.0 39 ......................... CCCAAGAACTCATGAAGTACGGCTTAGTAGTATTCGTAG 83987 25 100.0 39 ......................... ATTTCCTTAGGTAAAGGTAATATGGTGTAAACGTAATCT 84051 25 100.0 38 ......................... GCCCCATTGGTAGGGTAAAATCCTAGTTCTTTTAGGAA 84114 25 100.0 39 ......................... AATAATACGCCCCGCTTAGCCTTTGTGAACTGTTCTAAT 84178 25 100.0 40 ......................... ACAATCTGTGATGCATGTGCTAATCACTTCTTCTTGACAT 84243 25 100.0 38 ......................... TTTTCTTATCCCCATTAATATCTATGTTTCTGCAAGTA 84306 25 100.0 39 ......................... TTATCGGCAGAAGTAACTAAGCCAGCATTATTAAGCATT 84370 25 100.0 38 ......................... CTTCTTATGGAAGCATCAGTAACGTTATCAGTAATGAA 84433 25 100.0 39 ......................... ATTTCAACTTCATAACCGTTAAAATCACCGCTAATTTCA 84497 25 100.0 38 ......................... TCAATAGCAATTGTTTCGATAACTGCACATAAAATATA 84560 25 100.0 39 ......................... ATAATTCTAGACCTTCAATCTTCTTATCATTGATAATTA 84624 25 100.0 40 ......................... TCATCTGACGTCTTAAATACGCTTTTGGATATAATTTTAA 84689 25 100.0 38 ......................... ATATGCAATAATTTATGATTATGCAGAAATTATAGAAT 84752 25 100.0 39 ......................... TTTTCATGTTCATTTCAACTTCTAGAAGAACGTAGTCTT 84816 25 100.0 39 ......................... TACGTTGACGTTGAGCGTGATATTATTATTTGCCGTGAT 84880 25 100.0 38 ......................... TTTCCAACGACCTCACCACTCCTACTTAGGAAGAACGA 84943 25 100.0 40 ......................... ATATTATGCAATTAGGAGAAATAGATATTATTTATTGTAC 85008 25 100.0 38 ......................... AAAACTGATAAATGTCCTTGTTCTGCTAAAGTCTGAAA 85071 25 100.0 39 ......................... TTCATACATACCTAATTTTTCGTCACCAAACTCCATCAT 85135 25 100.0 39 ......................... GTTATTTCATAGACATCTTCTAATGGTCCCCTCTTTATC 85199 25 100.0 37 ......................... AACATTATCTAGTCTCCAAAGGAGGAAGAGGAAGGAG 85261 25 100.0 38 ......................... TTAAGCAGAGGATAACGTTTAGATGGGAAGAAGATTAT 85324 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ======================================== ================== 23 25 100.0 39 GTTGCATCCCAAAAGGGATTGAAAG # Left flank : TCATAAAAAGTTTTTACAAAAATCTCCAGTTTAACTTTCAAGATTTAAGAGTTTTTTAAGTAATTTTATTAAAAACGATTTTTAGTTTTACGCTGTTAATTCTGTGAGGGAAAAATCAAGACTTATAAATTCTTTTATAAAGATATTGGCTCCTTTTAATGAAAACTGATAACTATATTTCCTTATACTCTAAATATAGTTTAAGGGATGTAACTAATCTTGAACTGTTTAACGAGAATAACTGGTATAAATAAGTTCGAGTTTTATTAAGAGTTTAAAAGCGATAAAGTTTTGGTCTCAATGCGACCGTTGCGAGAATCAAAAGAAGAATTGAAGCCTTATAAATACATTTTCTATTTCAATTAGTGAAAAAGACCATGCGACCGTATTACGAAATTAAAATTACAACGAAAATTGGTCGCATGAAGAAATAAGAGGTGTGATGAAAACTTATTAATGAGAAAAGAGAAAAATAAGGATAGAGGTTAATAAAACAAACA # Right flank : GAATTCTGAGGGTCTATGATTTTTGTTAAATAATTGCATCACGTGAAGAAATTGAGGAATAAGTTTTCCTAAAACTTATAATTAATCTCTTAATTAGTTATCTTGTGATATTCACTTTTACTTTCGAAGTTAAGCCTGATAGGGACGCTATAATCCCTCCTTTTACTTCAAAACTTAGTAGATCTATTTTCCTCGACTTTTCTCCTACTTATTCGAAGTTTATAGAAGCGGAAGAACCTTATAAGCCCTTTAGGATTACGGTCTTAAAGGACGGAAGTACTCCGATTTACTCCAAGGGAAACGGCATGGTGACTTTGACCGGAGGGAAGATATATAATTTTAGCGTTACCACTACATTACAAAAGGTTGTTGAAGAAGTAGTTAGGACTACTAGTATAGATAAGGAAATATTTAACGCAAAATTTCACGTTGAACTTGATAATATGGAGATGAAGGAGGAGTTGGGACTGGAGGATTCGAGGCTTTACAAGGTTTTCTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCCAAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA //