Array 1 990270-989949 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075546.1 Methanospirillum sp. J.3.6.1-F.2.7.3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 990269 36 100.0 35 .................................... TGGATGCTGTGTCCAAAGTGTGAGTGGGGTTATGT 990198 36 100.0 36 .................................... CTACCCTTGTTATCGATATACGATACATCTGATAAG 990126 36 100.0 34 .................................... CAAGCACCGAGGCAACCATCAGAACAAGATAATT 990056 36 100.0 37 .................................... GCGTATCAGCTGTAGGTGATCGGTTCTCCGTCCGTGT 989983 35 80.6 0 A......A..........TA..........AA-... | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 96.1 36 GTTGCAAGTGACCCGAAAAGAGAAGGGTATGGCAAC # Left flank : ACGTGGAGAAGACAAAAGACCGGAACAAGGTGATAAAAGTCCTGGAGTATTATGGACTGAAACGAATACAGTATAGTGTATTTATGGGGAGTCTTACTGATACGAGACTTCACCAGATGAATACACGAATTAAACGGGAGTTTACAAAGCCAAGTATCAAGATTCTGGTGATTGAGGTCTGTAATGCCTGCATGGAACGGGCTCTACTTGTGCATGAGGAATTGCCAAAGGTGAACAGGAAGTTCGAGGTGATATAAAATAAGGCTGATTCAGACTCCGTTGGAGGGGTTCTGCAGATCTTTATATGGCAGGATGCCGATGGAGATCCATTGAGAAAAAACTACATCAAAGCAAAAACCGGGCTTGAATCGAAGAGTTAAATATATATATGATCCGAACTTCTTTAAATACCAGACCTCCGAAAAAGATCCATGGGCGATCTGATAAAATCGAGGTTCAGTACGATAGGTATTGAGCCGATCTAAGCGAAAAAAGTGGCG # Right flank : AGGTTTCTTGTTATTTCTGTGGTGGATTCCAGACATTCGTTGCAACTCACCTGATAAAACCATTTTTCAACAGTCAAGGTGAATTCCAAAACCATTAAAACGAATTTCGATGGATTTATATTCGGAATATGTTGACCACTATTGTGCCAAAAGATTTTAGTTTTTTATTATGAGAAGTTTACCGTGCTTTTAAGAAACGAAATTTCAACCGGGTCATTTCATCCTGCTATATAGAATACCATGAGCAGTCACAAGAAAAACCTTCAATATAATAGGCTGCAGAGAAATATGATATTATATTCATCCAACAAACCCTTCTTCTTCAATTTGCATTGAGAATATCAGATCAAAGATGGACAAGTGAAAGTCCTTTAGATAATATCAAATACTAATAACTCTTCTTCTTCATTTTCCTGTTCACATTGTTCACACACATAATTTCTGTCTTCCCATTCAGAATCATCATACTCATACTCAGTTTCCTGACCACATTGTGAACA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGTGACCCGAAAAGAGAAGGGTATGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 1002011-1001279 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075546.1 Methanospirillum sp. J.3.6.1-F.2.7.3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 1002010 36 100.0 33 .................................... ATGTATTTATTCATTTTTTCCGCCTTCTAAAAA 1001941 36 100.0 35 .................................... CCCCAAGGTTCATCATGCATATGGGTAATGTCTAT 1001870 36 100.0 34 .................................... AAACTGACATCACACTCATTCCCGGTCTTAAATT 1001800 36 100.0 34 .................................... AAATCAGATAATTCATATTGATCAGGTATTACAC 1001730 36 100.0 34 .................................... AAATCAGATAATTCATATTGATCAGGTATTACAC 1001660 36 100.0 34 .................................... TAATTGTTTATATCTCTGATCAGTGATTCAATAT 1001590 36 100.0 33 .................................... AATACAGTACGGCCATTAAAATTAAATGAGTTA 1001521 36 100.0 33 .................................... TATTTCGTTTCAATACCTTATCATATGAATCGA 1001452 36 100.0 32 .................................... CACCAACAGTCTTTCCGGCTTGTCTGATTTCA 1001384 36 100.0 34 .................................... TTCATCATGGCAGTTGTCATGTAAATGTACTAAG 1001314 36 88.9 0 ...................T.......A..C...G. | ========== ====== ====== ====== ==================================== =================================== ================== 11 36 99.0 34 GTTGCAAGTGACCCGAAAAGAGAAGGGTATGGCAAC # Left flank : GGTCATATTACCCAGTTCTTTGACAGTAAAATACAGATTACTGGTAATACGAGTGCCGGGATGACCAGGAATTCTCCTGGGAACGGTAAAAACCTTGTTGAGATAACGGTTGAAAAAGTAAGCCGTTTTTCAGCCAGTGAGTATCTTGCAGGGTGAATTCTCTATTTTTTTGAGAAAATGGTGTTACCTGAACAGTGGTTAAATGACTCATGCAAGAGTGACTCCCAGAGTTTAAGTGGTCATTTGAAGTTATCTGAAAGAAGACAGATCCAGGCTCCGTTGGAGGTGTTCTGCGGATCTTTATAAGGCATCATGATGTTTGAGATCCATTGAGAAAAAATTGCATCGGAGCAAGAATTGGGCCTGGATCGATGGGTTAACTTTATTTATGATCGGATCTTCTTTAAATACTGGACCTTCGAAAAAGATCCGTGATGGATCTGATAAAATCGGGGTTCAGTAAGATAGGCTTTAGGTCGATCTGAGCGAAAAAAGTGGCG # Right flank : TTCCCAGTTCGCAAAAAGATCAGGACTCTGATCAATGACTTGCCCAATTTGAAATTTTTGTGTCCTTCATAAGCGATCAAGGTTCTAACAAGTCTGAAAATAACTGGGAAGGGATTTTCAGTCCAAATATCATGAGAAGTTAAGAATAAGCATTCGCATACAGACAGTTCTACAACCTGCCACAAAATTTTCAAAAAATAACAAAATAAAGGAAAAATGGCCGCAAATGTTGAGCGGTTGCAGGAGTTCCGAATTGTTGCCTCTTCCTTGCCCGGATTAACTCCAATGTTTCTTCATCCATTCGGGTAAATTATTCTTCTTCTGCCTCATCTGAATAAATAACTTCTTTCCTTCCTTCACATCTTCTTCAGTAATCAGTTTCTTCTTGCCTGAAAATTTGAGTGTTCCGGGAGGAGAGATCAATCGTTTATCTATCGTGTGTATCATCGAATCATCTCCATGAGACAAAACAGTGTCTCCCTTCCGGACCTGTGAGATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGTGACCCGAAAAGAGAAGGGTATGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 2660519-2664940 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075546.1 Methanospirillum sp. J.3.6.1-F.2.7.3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2660519 29 100.0 32 ............................. ATGAGATCTCGTTTTATCGGAGAAAATAATGA 2660580 29 100.0 32 ............................. TCTGGATCGTCGAGTTGACAGGTCATCCCCTA 2660641 29 100.0 32 ............................. TACCAGCACTTCCGGATGGTATGCTATGTGTT 2660702 29 100.0 32 ............................. AGTCGGAATGGAAATCTAAATTTTTGGGGGTA 2660763 29 100.0 32 ............................. AAATAGAAGAAGAATGTAACACTGAATACACA 2660824 29 100.0 32 ............................. ACCAACTGCTGCACATGGTTCCTCCTCAACCG 2660885 29 100.0 33 ............................. TGGTGAGAAACGGAGAGAAAGTTGTGAAGCAGA 2660947 29 100.0 33 ............................. TGGTTTTACGGCAACACTCACGGATGATTTCAC 2661009 29 100.0 32 ............................. TCTCAGCTCCTTCTCAAGCACCTCGAGCGCAT 2661070 29 100.0 32 ............................. CCCATCTAGGGCATATCCATATAGCGAGATGC 2661131 29 100.0 32 ............................. ATGCCGGGCCGGGAATACTCAAAAACTCTGAT 2661192 29 100.0 32 ............................. TTTGGCAGGAATAAACAGTTTATCCCCTAATA 2661253 29 100.0 32 ............................. AAGTCATTCCTGATAACGGCGCTTCGCTTGGT 2661314 29 100.0 32 ............................. GTAACTGGAAGAACGGAGAACCTGGAATACTA 2661375 29 100.0 32 ............................. TAGAATATAAATTTATGCGCGCTTATAGCATC 2661436 29 100.0 32 ............................. TGTATCAAAATGAGCCTGCAAATCTGCCTTAA 2661497 29 100.0 32 ............................. ATATCCCGCCGATGGATCACGTTAGGATGCAG 2661558 29 100.0 32 ............................. CTGAAAGGGATTCGCATTCGGTGGAGGCGTAA 2661619 29 100.0 32 ............................. TAGTGGGAGCCACGAGGATGGTGGCACTGGGT 2661680 29 100.0 32 ............................. GACAAGTTAAATTTTTGCAGTCTTTTTCTTGG 2661741 29 100.0 32 ............................. CAGTAGAGAGCGGAAAAGATGTCGATGCATTG 2661802 29 100.0 32 ............................. AAACAGAATCCTGTGAAACCTGTATATTTATG 2661863 29 100.0 32 ............................. ATCTATTCGGAGATAAAACACCTTTAAATAAA 2661924 29 96.6 32 ............................T TCCCGCCGGTGCCCTGGAGTGCAACATCTAAC 2661985 29 100.0 32 ............................. ATCAAAGACCTCCTGAAAGAAAAGATAGTGAG 2662046 29 100.0 32 ............................. AAGCGGGTCAGGGAGAGCAGAGATGAGATCTG 2662107 29 100.0 32 ............................. TTGCAGACGCGGCAGCAGTCGCCTCGTATGAA 2662168 29 100.0 32 ............................. AATGGTTCAATTTCTCCGGTAAGGCTGCAGAA 2662229 29 100.0 32 ............................. ATCCGTGTATCTGACAACCTCGAAATTGCCGG 2662290 29 100.0 32 ............................. CGTCCGAGAGCGATTATTATATGCATCTCATC 2662351 29 100.0 32 ............................. ACGACATGGGCAATGAATATACAGTATGGTCC 2662412 29 100.0 32 ............................. TTTTGTAGCAAAGATTGTATGGATAAATGGCG 2662473 29 100.0 32 ............................. ATCAACCAGCCAGAGTCACCGGAACGATTGCA 2662534 29 100.0 32 ............................. ACATCATTTCTAAATATTTTTCTGCTTTCAAT 2662595 29 100.0 32 ............................. GCCTGCCACCTGGTTTCATTGTCATCGGCTGA 2662656 29 100.0 32 ............................. TTCTTCGTATTCGGTTTTACTTCCACCTAAAA 2662717 29 100.0 32 ............................. ACCAGTGATGTTCACAACCGGGGCAGCGGATA 2662778 29 96.6 32 ............................A ACAACAGACGCAGCAAAACCAATTGCGGTCGA 2662839 29 96.6 32 ............................T ACTCTATCTAAAATATGAAGGAAAGTGTTATT 2662900 29 100.0 32 ............................. ACTATCGGTATTTCTTCCGGCTCAGTCAGGAT 2662961 29 100.0 32 ............................. TATGATACCATTCGAGTATCATGAGCAAATGC 2663022 29 100.0 32 ............................. TCAAAACTCTTGAAATTATTGGACGAACTACC 2663083 29 100.0 31 ............................. TGTTTTCTGCTTTGGTTCTTCCGGGTGCAAC 2663143 29 100.0 32 ............................. GGTGACGAACGATACAATCGGGTGACGGTAAT 2663204 29 100.0 32 ............................. GCTGCAGAAAAAATCGTCCGGCTGAAAGACGG 2663265 29 100.0 32 ............................. ATTAAACGGTGGCAGAAAATGTACACCCGGGG 2663326 29 96.6 32 ............................C AACTCGGTCACGGCCTGGGGGGACACGCTCAA 2663387 29 96.6 32 ............................T CCGGCGGCATGAGGACGACTGGAATATGCTGG 2663448 29 100.0 32 ............................. AGCGGGCAATACTGAATGAGTACGCGACCCGG 2663509 29 100.0 32 ............................. GAGTATGTCTACTTCCCGTTCATATGCAACAA 2663570 29 100.0 32 ............................. CAAACAGAGCGTATGGAAATTCATTAACCCCC 2663631 29 100.0 32 ............................. TATAATCCATGATTATAACCTCGCGTTTAAAC 2663692 29 100.0 32 ............................. TGTTATACGCGCCTGAAAAACTGTCCACTTGG 2663753 29 100.0 32 ............................. GCACCTTGTATATTGTTCGTTGTTTTGGTTCA 2663814 29 100.0 32 ............................. TCCACTGATTTCAAGCGGTATTCACAGTACGA 2663875 29 100.0 32 ............................. ACATCTGGCTGATACAATCATTTGTTCCGGAT 2663936 29 100.0 32 ............................. GACCGGCACGCAGCACTAGACGCCGAACTCGA 2663997 29 100.0 32 ............................. CCGCTGAAGCCGGGAAAAAGGCTCTCATCATT 2664058 29 100.0 32 ............................. CATTTGTTATCTATCGGGATATGGGAGTAGAT 2664119 29 100.0 32 ............................. TCGCGGCTTTCTCTGCTTCTTTTGCCTGCTCT 2664180 29 100.0 32 ............................. TGAAGAGTATCGCCGGTTCGTCTACTGCGACA 2664241 29 100.0 32 ............................. AGCAGGCAAACAGGCTTGCAGGAATTGAGGCA 2664302 29 100.0 32 ............................. TACCGTAAATAATCCCCGTAGTTCTGACCGGA 2664363 29 100.0 32 ............................. CGCCCAGGCGAAGATAGAGAATATTGCTCGTT 2664424 29 100.0 32 ............................. TATGGGGTCCAAACGCAACGGCAATTGCTTAA 2664485 29 100.0 32 ............................. CGGCAGCAGTCGCCTCGTATGAAGCCACGAAC 2664546 29 100.0 32 ............................. AAACGCAGGTTCAAAAACGGCGAATGGCTCGA 2664607 29 100.0 32 ............................. CATGGAAAGGCATGCTTGACGTTAATCAGGAG 2664668 29 100.0 32 ............................. ATGGTTGTTCCGGAGTGGTTGTGATCGTTCCT 2664729 29 100.0 32 ............................. TTTTCATCATTAGTTCGGTTAGGAGTTCGGTT 2664790 29 100.0 32 ............................. GTTCCGGAAGGTGTGTACGTTGGCAGGAGGAA 2664851 29 100.0 32 ............................. TTTCAGGTCAAGCGATTCATACACCGCCTTGA 2664912 29 86.2 0 .......................T..AGT | ========== ====== ====== ====== ============================= ================================= ================== 73 29 99.6 32 GAGTTCCCCGTGTGTACGGGGATGAACCG # Left flank : GATTTATTCAGAGAGACTCATCTCCTTAAAAGGATTATTCCAACAATCGAAGAGGTACTAGCTGCAGGTGGTATTTCAACTCCTGCTCCTCCTGATTGGGTTGTTCCACCGGCGATTCCTGTTGATGAGGAGGGATGAGTTACAGTGATTGTTGTGGTAACAGAGGGAGTCCCTCCTTCATTACGGGGCCGGCTTGCAGTTTGGCTTTTGGAGGTTCGTTCCGGGGTGTATGTTGGCTCATATTCAGTCCGGGTAAGAGATATGATCTGGAGTCAGGTGTGCTCAGGTATTGGGAAAGGGAATGCTGTAATGATGTGGCATACACCGACAGAAGCAGGTTTTAAATTTGAGACCGTGGGCCATAACCGCCGTATCCCGATTGATGCTGACGGGCACCCATTAGTAGCATTTATGCCGGAGGAGAAGAAGAAAAAGTAATGCTCATATGAGTTAAGCCTCCGGAGGAAGGGCGTTTCCTCCAAGAGGGGAAAAAGGGAAGA # Right flank : TCGAAGCTGGTTCCCAGAATTAATTTTGAACTTATATTTAATTTTTAATCTTCATTTCTTCTGCTATAGCAATACTTAGACTAGAAAAACATGGTCAATCAAAGATACTATTATGGGTCCGATTTTTATCGGATGCAACAAAAGATTATTAGCTCAAAAAACCATTATTTGCCATTCCTTGTGATACAGGGATGAACCATCTGATTATTAGGTGTATGAATTTTTCACATGATTGTTCCCCGTTAGTACGGGGATTTATTTGCAATCATCAATCTGCGGATAAACCGAAAGACATTTTTGTATCTGTATAAAATAAAACACTTATGACAGATAGTCATCATTCTCCTTCTGTTCATATTATTCCACTTGGTTATGAGATTGATCGTGCCATTAGACCATTTGATTCAGAAAATGCAGATCGAGTGTATCTCCTCACCATGAAGCAAATGGAAAAATACAATACTCCAGAAGAGATCCAGATGACTGCACGGGAAAGATAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGTGTGTACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //