Array 1 5658-4632 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFHN010000009.1 Streptococcus suis strain K364 Scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5657 36 100.0 30 .................................... CTCTAGCAAGCTACCTGTGAAATAGCTTTC 5591 36 100.0 30 .................................... TTCTATTATCTACACACCAGAGCTAGTAGC 5525 36 100.0 30 .................................... TGGACGATTGAGAATAATGGACGCGGCACT 5459 36 100.0 30 .................................... CGCTCGTCCCGACGTTGCTTGCGATTTCTC 5393 36 100.0 30 .................................... CTCTAGCAAGCTACCTGTGAAATAGCTTTC 5327 36 100.0 30 .................................... CGCTAGGAAGAATAAGAGTTATTTTTATGA 5261 36 100.0 30 .................................... CGATAACAAAAATGGTGAAAGCAAATTGGC 5195 36 100.0 30 .................................... ATGGTTCGAATAGTCGGAGCGATACCGTCT 5129 36 100.0 30 .................................... TGCTTAATTCTCCTCCATTTTCTAACTTTT 5063 36 100.0 30 .................................... CCAATTGAGCCAAAAGCACAGTCACGTCCT 4997 36 100.0 30 .................................... CTATCACAGTTGACGTAGGCATACTGTGCT 4931 36 100.0 30 .................................... TCTACTTTAGCGGAGTGATAGACGCTATTG 4865 36 100.0 30 .................................... TAAAATTGGACCACATCTCACGACCAGTCT 4799 36 100.0 30 .................................... ATTGTTTCATTTTTTGTTTACCTCCTAGAC 4733 36 100.0 30 .................................... TGCCGGTGCATGGTAATGTATTAAAGTTAT 4667 35 88.9 0 .........................A..A-.....G | T [4634] ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.3 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAAACAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTTTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTCGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACAGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAATTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CAGTAAGTTTATAAAGGAGGGGAGTAATTGGATGTCAAAACTGTTATTTTTTAATACTTCTATTTCTAACAGTAGTAGTGAATATTGTAACTTTAATTATCAAAAAAATCACTAAAGAGATCGAAAGAAATAAGTGGGGATGAAATTGATAAAGAGCTTAATTTGATAGGTCTTCCTGATTAAATTCTACTTTATATCACTGTTTTAATTTTTTCTAGTTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTCGCCCTTGTCCCATCTCCCTCTCCATGCTATACTATATATAATCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTACAGATCACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //