Array 1 171329-172943 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDIH010000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain SGEHI2016-PSU-BS-010SL opera_scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171329 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171390 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171451 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171512 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171573 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171634 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171695 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171756 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171817 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 171878 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171939 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 172000 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 172061 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172122 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172183 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172244 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172305 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172366 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172427 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172489 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172550 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172611 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172672 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 172733 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 172794 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 172855 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 172916 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189451-191981 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDIH010000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain SGEHI2016-PSU-BS-010SL opera_scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189451 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189512 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 189573 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 189634 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 189695 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189756 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 189817 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 189878 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 189939 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 190000 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190061 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190122 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190183 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190244 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190305 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190366 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190427 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 190488 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 190549 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190610 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190671 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190732 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 190793 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 190854 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 190915 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 190976 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191037 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191098 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 191159 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 191220 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191281 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191342 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 191403 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 191464 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 191525 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191586 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 191647 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191708 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191769 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191830 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191891 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191952 29 93.1 0 A...........T................ | A [191978] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //