Array 1 692292-694665 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOE010000002.1 Akkermansia muciniphila strain Akk18645 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 692292 31 100.0 36 ............................... TCATATAATAATTTACTAATACTAAAGCTTTTATGC 692359 31 100.0 34 ............................... TTGTATTGATTTTTAACGAGTTATGAAGACGGAT 692424 31 100.0 34 ............................... CTTTCTACTTGTTTTTTGATTCCGGCGGGCAGGA 692489 31 100.0 35 ............................... AAGGGATCGTATAGCATCCTCGTTGAGGCTAAAAC 692555 31 100.0 34 ............................... CGTCAATCCGGGTCCGGGCACTACCCGGGATTTA 692620 31 100.0 34 ............................... AGCAACTTAACCGCTTTACCAACTCGGCTCTTGA 692685 31 100.0 34 ............................... TCGACCGTCTCGTATTCTGCCCCGGTTTCGCCGC 692750 31 100.0 34 ............................... AAATTCCTATTGCATCCCTGACGGAACCGAATCT 692815 31 100.0 34 ............................... GAGGTGCATGACATGTAAATGGTTTGAGGTATGG 692880 31 100.0 34 ............................... GATAAGGAGGATAAGGAGCAGGAAGGGAAGGAAG 692945 31 100.0 34 ............................... ACAAGACTCTTGAATTATGGATATCATGGTGCTG 693010 31 100.0 33 ............................... CATCAAGGTTGAATTGGAAGCCGGGAACCGGGA 693074 31 100.0 33 ............................... TACTTCAGATAAAGATCAGCATCCTTTTCCGAG 693138 31 100.0 34 ............................... TACCTACAATTCCTACGTCAACGGCCAGACTGTC 693203 31 100.0 34 ............................... CTTTGCAATATATGTTTGCACTGCACGACGGAAT 693268 31 100.0 34 ............................... CTTTGCATCCCCGAATCAGGGAATCAAGCTGATG 693333 31 100.0 34 ............................... GACAGCGTGGGGCTGAGCAACGACTTGCTGAACG 693398 31 100.0 33 ............................... CGTGGATACGTGCAGGAGATGTCTGACATTTAC 693462 31 100.0 34 ............................... GTGCAAGGCGACTACATAGCCGTTCCATTTCAGC 693527 31 100.0 33 ............................... GGAGCAGAGGACAAGGCTCCCGTAGCCCTTGAT 693591 31 100.0 35 ............................... TGTATTACATTTGAGGGATGATGATTCTGGAGCGG 693657 31 100.0 34 ............................... CCGTGAAGGGGTTGATGGTACTCAGAAACTTGTC 693722 31 100.0 34 ............................... CGCCTGCTGTTGAGCCTGCCAGGACTGACGCATG 693787 31 100.0 34 ............................... ATCAGGGTCAGGGAGTCGGTTGTCATGCCACAGG 693852 31 100.0 34 ............................... CTCTTCTACGTCACTCTCGAAATAGTCCTCCCCA 693917 31 100.0 36 ............................... AATATATGTTTGAACAACTTGCAATTTCTTCTATTG 693984 31 100.0 34 ............................... TCAAGACCTGCAACATTATCGACGAAACATATAT 694049 31 100.0 35 ............................... GAGGTTATCAATGCAGGATTTTACATCTTGCGGAA 694115 31 100.0 34 ............................... CTGATAAATTGTGAAGTGCAGGCCCCCGGCGTTG 694180 31 100.0 34 ............................... AGCAGTATTCAGCCATCCGGCTTTATCATCATCC 694245 31 100.0 35 ............................... CAAAAACGCGTGGACGACGCCCGCGCCAGCCTCGC 694311 31 100.0 35 ............................... CAAAAACGCGTGGACGACGCCCGCGCCAGCCTCGC 694377 31 100.0 33 ............................... GATAAGCTTGTATTCCGCCAGGGTGATAGCCTG 694441 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 694505 31 100.0 34 ............................... TTTTCATCACTTCCGCGTCGCCGGAATTGGTGAT 694570 31 100.0 34 ............................... GGTTCCGGCGGCCCTATCCGTGAAAGCATCTTTA 694635 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== ==================================== ================== 37 31 99.7 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCCTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCAGTCCCGGGGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGGGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTCCTGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : GTCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 390195-388222 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOE010000003.1 Akkermansia muciniphila strain Akk18645 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 390194 33 100.0 33 ................................. TCATTTACCACAAGATTTTTATTCAGGGATCGC 390128 33 100.0 34 ................................. GGGGAGAAAAGCTTGCCGTGGCTCCCGGAATCAC 390061 33 100.0 34 ................................. AAGGGATCGTATAGCATCCTCGTTGAGGCTAAAA 389994 33 100.0 35 ................................. ATCACCTCGTCGCCTGGCGCCGATTCCGGCACCTT 389926 33 100.0 33 ................................. ATTTGGTCATTGCCCAGGAGGAAGCTCTTACGA 389860 33 100.0 34 ................................. TGGTAACAAGACCTTTACTGGGGGAGTTATGAAA 389793 33 100.0 34 ................................. CCACGCCTGGGCATCATCCTGTCCATAGAGAAAA 389726 33 100.0 34 ................................. CTTCATCGGGGCGACCAACGAGCCAAAGCCTTTG 389659 33 100.0 34 ................................. CCGGCTTTGAGGGCCTGTCTGACGATAAAGACAT 389592 33 100.0 35 ................................. CCCAGCTTCCCGGAGCTTCTGCCCTGGATACAAAT 389524 33 100.0 34 ................................. CGGGAGCTGGAGACACAGGGCCTGATGGAAAGCA 389457 33 100.0 34 ................................. TTTCAAGGGCGTCATCCAAGCAAAGATTCTCTAC 389390 33 100.0 33 ................................. GTGGCGGCTAGGGATATTTTCTTTCCGTTACTC 389324 33 100.0 34 ................................. CAGATACCAGCGTGCTTTCTTGAGGTCTTCAATA 389257 33 100.0 33 ................................. GTTAAACTACAAGTAAAACAGCTGTCAAGAAAT 389191 33 100.0 33 ................................. AAGTTCAAACTGTTGCATCACCTTGGTCATCAG 389125 33 100.0 34 ................................. GTCGCTGGTCAGATGCTGGTTGATGTAGGCCCTA 389058 33 100.0 34 ................................. GTCCCGGTAGCTGTAGTAGGCACTGGCACTGGCC 388991 33 100.0 35 ................................. TATCTCGCAAATATCATTATCTGATAAACACAACC 388923 33 100.0 34 ................................. CTGAATCCCATCTCAAAATTGGTAATGACATCGT 388856 33 100.0 34 ................................. GGATTTACGCTATCCAAGTAATGATGAAGCACTT 388789 33 100.0 34 ................................. ATTAAAGTATTCGACGATATGCCTCAAAGCTGGA 388722 33 100.0 34 ................................. ATACCATTCGGCGGGATAAAGCGTTAAGTGCGCT 388655 33 100.0 34 ................................. TTTGAACATTTCACACGGCCTTAATTCGCATCCA 388588 33 100.0 34 ................................. CCCACTATGGGCGTGGTAAGGGAAAACGCGGTCC 388521 33 100.0 33 ................................. CGTAGTTGTATTCCCACGCGTAGAATTGAGCGG 388455 33 100.0 34 ................................. TTCACCGTCTTGACGGCAAACACCCCAGCCAGTT 388388 33 100.0 34 ................................. GGTATCATGGTCACAGGTCAGGTGCAGGACAACG 388321 33 100.0 34 ................................. TCGTTGAGATTATCCAAAGCTATAGCAGACAAAT 388254 33 97.0 0 .................A............... | ========== ====== ====== ====== ================================= =================================== ================== 30 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTTAGCCATGTATATTCTCATTACTTATGATGTAGCTACGGATGACAAGGCCGGGCAGCGGCGGTTGCGTCAAGTTGCCCGCGCCTGTGAAAATATCGGTCAGAGAGTGCAGAATTCCGTGTTTGAATGTGAGCTGGCTCCGGCCCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGCGACAGCCTGAGAATTTATCACATGGGGTCCAATTGGCATCATAAAATAGAGCAATTGGGCAAGGAGAAGAGTTTCGACATTTCCGGCCCTTTGATCATTTAAAAGCTGTCTGAGCACGGCCTTTGCGCCAACCCCAAGCTCACACCAATTTCCCGGGAGATCGGCGATTGGCGTAATACATTGGGAATGGAAGATTGACAGATGAATACTTAGAAGAGAAGGCTAGGTGATGATGGCCTTCTTCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAATAACAATGTATATGGTCAGGCGCA # Right flank : ATCGGAAAGGCTTGCTATGTCCGGATTTGCGTAACTCTTCCTAAAAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTTCGGGTTTCGTTGTTTATTTTTCAGCCGGGGGCTGCCGGTTCAGATCGAGTTCTGCGGGAGGGAGGGACTGGAGCAGGGTCAGAATGGGGTCCTGCGGTGCGGCGCCCGCTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGGAGGGCCGCCAGTTTGGTATCTTCCACCAGCGCCTTGAATTTGTCCGCCTGGGAGTATTCTCCATCCGTATCCCGGAAGACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGCTCTTTCATGGGCTGGGGAGGGTGTTTTTATCCAGCAGGTTTCCTGCAAGCTGTTCCCCATCCGCGGTGGGGCGGTAGACGTAAGGGCGGCTGTCCCCGAAGCGGTTGATGTATCCCTGTGCAATGAGGTCCTGCAGGATGTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 401229-398667 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOE010000003.1 Akkermansia muciniphila strain Akk18645 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 401228 31 100.0 34 ............................... TTTTGCTACTTACCATATTGAATCCAATACCATT 401163 31 100.0 34 ............................... CGTCAACCCCCTGGGCCCCTACACCATTATTGCC 401098 31 100.0 34 ............................... AAGTCGATACGGTCTATCAAGTCACAGGTCTAAC 401033 31 100.0 34 ............................... CCTCCCCGTCCAGAACCCCTACTACTTTGACCCG 400968 31 100.0 34 ............................... GCCTTTGAACGCTATACCAAGGCGGACCCCAGGA 400903 31 100.0 34 ............................... ACTGTATCAAGTGAACATTCAGTCCGAGTCTCCT 400838 31 100.0 35 ............................... TTGACGGTATAAAACATAAACGATATAGTGTGGGA 400772 31 100.0 34 ............................... TTCCGCTAGAGTATCATGACGCCAAAGGCGCGCA 400707 31 100.0 34 ............................... CATATAGCTGCCGTCTTCGTATTTGTCCGCATAG 400642 31 100.0 34 ............................... TTTCTAAGGTAGGCTACTCTGGAATTTGAGTATC 400577 31 100.0 34 ............................... ATCCCGGAAACCAATCAGGAGTACGCAAACGCCA 400512 31 100.0 33 ............................... GGGACGGCAGGGGCGGCAAGTACCCGCCATCCG 400448 31 100.0 34 ............................... TTGTTATGCCTGAATCGTGCTTCCGATTTTGCAT 400383 31 100.0 34 ............................... AGTTTGAAACAGGCTATGCGCCGCTGAAGATTGC 400318 31 100.0 33 ............................... CTCTTCTGGCTAATGCAGTCGGCAGTCTCTCGA 400254 31 100.0 34 ............................... ATCAGGGCGGACTGAACATTGCCCCCAATCCGAA 400189 31 100.0 34 ............................... AGTATATTCTTGGCACCATCCAAATCCCGGTGGC 400124 31 100.0 34 ............................... AACGCCTCCTGCTCCTCATGGTAGAGCTTTGCCA 400059 31 100.0 34 ............................... AGAGTTCGAGCAACTCTAACCCGGGATCAGGAAA 399994 31 100.0 34 ............................... ATTGGTATCCTCCGGCATGTTCTTGACGTAGATT 399929 31 100.0 34 ............................... CTGTCTGCAACGGGTCTTCCGGGTTAAGACGGAT 399864 31 100.0 34 ............................... AGAGTCCAAAAGATACTGTTTTGCGCGGCTGGAA 399799 31 100.0 34 ............................... CTTAGTAGTTCCTCAGCCTTGGATTGCATTGCTA 399734 31 100.0 34 ............................... TAATAGTTGAATGTTAGTGTGTTGTTATTCTCCG 399669 31 100.0 34 ............................... CATCTGGGCGGCGGATTGTTCGTGCATGACGGCA 399604 31 100.0 34 ............................... CTCAACTTCACGCGCTATGTGGTAATCCTCCATA 399539 31 100.0 34 ............................... CAATAATTTTTCAAATCTGTAGCATATATCCTTC 399474 31 100.0 34 ............................... TGACGGCAAGAAGCTGAATAGCCTTTGCCGTCTC 399409 31 100.0 34 ............................... GATGGACATGCCGATCTTTTCCTCGATTTCGGTT 399344 31 100.0 34 ............................... TTCCGGATGGCACGTCAACAACGGTGGGCGTGAT 399279 31 100.0 34 ............................... CGGAGGCCCACGGGCGCCGGGCGGCTGATTATCG 399214 31 100.0 34 ............................... TCTAACTCCTTTTCAAGGTTAGCACAAAGCAAGA 399149 31 100.0 33 ............................... AACCCTTCTTGCCTGCGGCTTGCAGGGCTTCCA 399085 31 100.0 34 ............................... CGTTGGACAGTGACGCATGGTTATTTTCCGGGAA 399020 31 100.0 34 ............................... TAAAGACGTAGTACATTTTTTCGCCCAGGGCCAG 398955 31 100.0 34 ............................... GCTTCGTGGAAGCCTGCTGAAATACGGAAAACAT 398890 31 100.0 34 ............................... TATATTTTTTCGTAAGAATCTCTAACTTGTTCAC 398825 31 100.0 33 ............................... CTGTGTCAGGGTCCGTGATGGTCCTGGTTTCGA 398761 31 100.0 33 ............................... TCCTCCAGAAATTCCACAAAGTCCTTCTGGCTC 398697 31 87.1 0 .........A................T.G.T | ========== ====== ====== ====== =============================== =================================== ================== 40 31 99.7 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : CCTTGGAGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACCTGCTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGACAGCCGCCGATGCCGGAAAACACTTCAAGGCCACTCCATTAATATGGAGCGGCCTTTTGTTTTTGGAATGGCAGAGAAAAAAAGTTGCTGGACGATAGGCCGCTGGCCATCTAGCATTAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATTGCTGAACTGATAAACTGTTTGCGCCAACCTCAAGCTCACAGAAATTCCCGGGGAGATCGGCGATTTCTGTAAGTCCTTGAAATCAGTAGATTGACATTCTCTCCAATAAAATATAAGGGGGTAAGGAATATGCATCCTGAAAGAGGTTGGCGCAAAAAGCGATTTGTACCACTAACTTTGAACGCATATCCCCTTCCGCC # Right flank : GTCGCAGACTGAACGGCCTACTATCTCTGGAATGAGAAGGAGCAGTTGGCTATAACACTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTTGTGAAAAGAAACAGATCAGAAGCCTTCAATCATTTCCGGGGTTAACCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGACTTCAATGGAATGGTGAACCTTGGCAGAAGAGTATTGACCGCTTTTACAGTTATGTTCCCACCAAATGACTTTTTGAATAGACATGCTACCTTCCGGTCGTGCAGAGGAGGCATCTCCTTCAAACATCTGAGGAAGCGCTTGTTTGAAAATGGATGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGCGGATTGATTGCTCCAAAGAAGACATAGGTGCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTACTGCCGTCTCCGTCATTGCTGACGCTTTTCGTGAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 604083-603596 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFOE010000003.1 Akkermansia muciniphila strain Akk18645 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 604082 31 100.0 34 ............................... TCAAATTCTTGCCTAATCCTCCAAACTGACCCCC 604017 31 100.0 34 ............................... ATTTGACAAGCCCTTTAAAATGAGTGAGCAGATG 603952 31 100.0 34 ............................... CCGTCCGCCGCCGGGTAGTTTGAGGGAATGAAGC 603887 31 100.0 34 ............................... CAGCTCCTTGATTCTGGTCTCCTGTTGGGCGACC 603822 31 100.0 34 ............................... AGAGTTAAACCCCTTCAGGCCGCCGGAACCCTTG 603757 31 100.0 34 ............................... TCGTCAACTCCGCTCTTTGTAACGCGGCCAAGGA 603692 31 100.0 34 ............................... CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 603627 31 87.1 0 .....................A..A....TA | G [603609] ========== ====== ====== ====== =============================== ================================== ================== 8 31 98.4 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGAATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCACGCCGCCCGGGAGGCCTGTTGTTTTTGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACATGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGCAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGACCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTTCAGGCC # Right flank : GTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGGGAGGTGATTATTATGATAAATGGTTATTTATTGAATATTCTTTTAAGGAGGATTTTTATGTTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGCATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCCGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGACCCGGACCGGGC # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //