Array 1 15267-17370 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYWL01000003.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTU2168x NODE_3_length_179124_cov_18.2751, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15267 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 15328 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 15389 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 15450 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 15511 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 15572 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 15633 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 15694 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 15755 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 15816 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 15877 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 15938 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 15999 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 16060 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 16121 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 16182 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 16243 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 16304 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 16365 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 16426 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 16487 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 16548 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 16609 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 16670 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 16731 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 16792 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 16853 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 16914 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 16975 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 17036 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 17097 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 17158 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 17219 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 17280 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 17341 29 96.6 0 ............T................ | A [17368] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5193-6440 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYWL01000071.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTU2168x NODE_71_length_7876_cov_17.3159, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5193 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 5254 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 5315 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 5376 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 5437 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 5498 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 5559 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 5620 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 5681 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 5742 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 5803 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 5864 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 5925 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 5986 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 6047 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 6108 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 6169 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 6230 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 6291 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 6352 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6413 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //