Array 1 65601-63892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJD02000022.1 Aphanocapsa montana BDHKU210001 NODE_160_length_65679_cov_198.832398, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 65600 37 100.0 34 ..................................... GCTCCTGTGCGCTGTGCTCCCGCTTGAGCATCTG 65529 37 100.0 33 ..................................... TTTACTATCTCTTTGCCTTGATTAGGAGGCTCT 65459 37 100.0 35 ..................................... TATCAGGAAGCCTCGGCCCATGCACGGAGCCACAA 65387 37 100.0 34 ..................................... AGGGTGGCTTTTCCGTAACCCTGTCCTACGTGGA 65316 37 100.0 47 ..................................... AAGATGGGGACGCAAGGCAGTTAAGGCCCTTATTTTGGTGGGCGCAG 65232 37 100.0 33 ..................................... CGTTCTAGGCTTCACCTGTGAGGAACAGAATAG 65162 37 100.0 35 ..................................... ATCGAATACATACATGAGGGTCACTACTATGTTAT 65090 37 100.0 38 ..................................... CAAAGTTCCTAAAAGACAGAGGAACTGCCCAATCTTAG 65015 37 100.0 35 ..................................... TAGTTTAACCTGCTCTAGCTTTTGGAAGTTAGCCA 64943 37 100.0 35 ..................................... TAAATTCTTGGAGAAAAATAAGGGGGGCAAACCAA 64871 37 100.0 35 ..................................... CCGTTTCTTCAGGTGCTCCAAGCTAAAAAGCTGGA 64799 37 100.0 34 ..................................... CTTAATCAAGGGCTTCATCTTGCGTAGCTTTGGG 64728 37 100.0 35 ..................................... ATGCCGGGAAGCAATAGCAACCAGGTTGTTGCAAG 64656 37 100.0 36 ..................................... ATAACCGCGTTCGTGCCACTCACCCCAGGGATCGTG 64583 37 100.0 43 ..................................... TGGTTGCAGCGAACTACAGCCCCAGCGCTGGGAATCGGCAGGG 64503 37 100.0 36 ..................................... TCAAGCTGGCGCTGATTGGTGGGCAGTGAGTTACAA 64430 37 100.0 33 ..................................... CAAGCGGCCATCACGGAGGACGGAAGGGTGTGG 64360 37 100.0 35 ..................................... CGAATGAACGCGCTTATGCGAGAGGTCTACCCTGC 64288 37 100.0 36 ..................................... AACCGCGCAACAGCAAAGCCGCCCAGACGGTATCTA 64215 37 100.0 35 ..................................... TTCTTGGATCCCAGTTGGACTCCTCTCCATTCCCC 64143 37 100.0 34 ..................................... GTGGGGGATGCGGCCTACCCCTGGTTCAACCCCA 64072 37 100.0 36 ..................................... TTGTGGATTGGACTACTGCCCTCGCTCTCCCGCATT 63999 37 100.0 34 ..................................... GCGCTACTGACAACTGCAACAGGTTGCAGCGTGT 63928 37 86.5 0 ..........T..................GC....CG | ========== ====== ====== ====== ===================================== =============================================== ================== 24 37 99.4 36 GTCTCAAAACCGCCCAAGCCCTTTCAGGGATTGAAAC # Left flank : TTGAGATATAATGATTCAAAGCGTATCCGCGCAAATGAACCTTGAAAATCAAATATATCCAATGTTTCAGAGGACTGG # Right flank : GCCCATTAGCGAAGTAGGATCTTATGCCGCTTTGGTGATGTGAAACCGCGATCGCCCTCAGTACCGGATAACAAGCTGAATGGGCTCTTATGCAAATTTAGTGAAAGCGCTATCCATTAGGCTCATCTTTCTCCATTCACAAAGCGAGTCCTGAAACGCCTGCTTTTAGAAGCCGATAGGGATTACTGTTGGGATGATGCAGGCGATTTATGATACTAGATAGCGACGTACAGAGAGGGTCTATGGATTAAGGGATTTAGTATTACTGGCGAGTACACTCAACTAGTCAATTTCAATCATGTTTCTAACTTGCTCTTGAGTGGCAGATCCCTCCAGAATATTCTCAAAGACATGATTTAGTGGTAGATCTAAATTTGCTTGTCTTGACAGAATGGGTGTCTCTGCCAAACGTTGACACAACTTTTTAGAATCAAGATACTCCTGAGATTCTTTATTCACAAACTGAGGATCACGTTCGCGAAACGTCAACATATAAATTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAAAACCGCCCAAGCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 1 1006-2458 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJD02000037.1 Aphanocapsa montana BDHKU210001 NODE_248_length_42802_cov_297.495939, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 1006 36 100.0 41 .................................... ACACTCCATACCTCGTCACCGACGTAGGTCACCTCGATAAA 1083 36 100.0 38 .................................... GACAACTCAAAGTAGGGGGTTGCATCCAGTAATAGCGA 1157 36 100.0 36 .................................... CTTCTACGATGTAATCAATCCGCAGAAGTTTGTCTA 1229 36 100.0 40 .................................... TCGAAGATGGAGCCGACATCACGGCCCCCGTTTTGGTATT 1305 36 100.0 38 .................................... GCGGATGATTCCCCACCTGCTTAAGGCGATCGCATTCC 1379 36 100.0 39 .................................... AGGGCTATGGACCGGAGGTTTGTATTTCTACCTCTATTT 1454 36 100.0 36 .................................... TACGACAGAAGGCGGCAACATCTGCGCGATCGCTTG 1526 36 100.0 40 .................................... TCTACCACAGAGCTAACCCTCCACGGTCGGGACGACGATG 1602 36 100.0 38 .................................... TCGCCTTTAACTCCTTGTAACCGTCGCTATTTGATCCT 1676 36 100.0 37 .................................... GCTCATCTTTTTAGAACAGATGAGCCGAAACGAGGCG 1749 36 100.0 40 .................................... AAGGATGCGGCCCTAGAGTGGCTGCTAAACCCCAAACCCG 1825 36 100.0 43 .................................... TACCTCAAATCGGGGTCGGTGAACGATTTCACTGAACTCATGC 1904 36 100.0 44 .................................... GCCTGATACCCCCCGGACCGGATAATGAGCTGTTGCTCTTCGAG 1984 36 100.0 36 .................................... AATCAAACCTCAACTTCTCTTAAATATTGATTAGTC 2056 36 100.0 35 .................................... CGGGATGCCTTGGCAACGGACTTACCAAATCCCAC 2127 36 100.0 37 .................................... GATCGCCAGGAAGCTGGGGCAGGAAATAATCAGCAAA 2200 36 100.0 37 .................................... TTTGATGCCTCCGTGCGGGGCCTAGCTAGCCAGAAAT 2273 36 100.0 39 .................................... CAGGATTAGACTGGTATAAAAATGCTGAGCTTATTGCAA 2348 36 100.0 39 .................................... TCATGTTACATGACCGTGGTGTGGGGCATCACGTAGCAA 2423 36 88.9 0 .........T.....A.G........A......... | ========== ====== ====== ====== ==================================== ============================================ ================== 20 36 99.4 39 CTCCCCACTCGCTGGGGAACTCATTTGATTGGAAAC # Left flank : TAAATCGTCAGGTCAAGGCTTTTAAGCAATTTGTCTATGACCCCAGTTTGGGATATGAACCTTATACCATTCGATAAATGGACCGCCATGTTACTCTACGTGATCACCTACGATATTCCTTGCGATCGCCGTCGGAAAAAGGTTTCGGATTTACTGGAAGGGTATGGACAACGGGCACAGTACAGCGTCTTTGAATGCATTTTGTCTGAGAGAAAATATACGGAGCTACAAAGTCGGTTACGCAAGCGGGTAAACTTAGCAGAGGATTCGGTGCGGTTTTATCCGCTTTCGAAGCATACGCTCGGTGGTGTTGATGTTTGGGGGGGAATACCCCTGGTGAAGATGCCGGGTTCTGTGATCGTTTAAGCGCTCGATACCTTGGCTGGATTGGGTTTTGGGTCATGAAAGGGAGTTTGGGAAGGGTTAATGGGTGTGATTTTTGGGAGCGTTCGCAAACGTGGCTTGAAAGTCTTACCTGCTATGGGTTTTAATAGGGGTAG # Right flank : CAATACGATCGCCCCCTCATCCCCCCTGAGACCCCCACCCAAAATCACCCGCCCTCAGCCCCCTCCCGTTGGTCATTCGCACCAAAAAAAAGATCTGCGATCGCAGCCTCGATAAGCTGAATTTGTTGATGAGACCGAGGCGTGCCCATGACCAGCCTGACCCCCCAATCCAAACTCTCTGCCCACCTCACCGAAAAAAACGTCATCACCGGAGCCATCCTCTCCGCGATCGCTGGCGTTCTCTTCCAGCAAACCACTCTGACCGCCGTACCGCTGGGGATCACCCTGCTCCTGACCCAAACCCAGCGGCGCAGTAACAACACCGAACTCCGCAAAACCCTGCGCCAGCAGACCCAAAGCACAGAGCAGATCTACGCCCAGATCCTCCTGATGCAGCAGCAGCTTAAAACCCTCCAGAACACCAAGCCTGCCGCTGAACCCACCCCCTTAATCCGGCAACACACCACGCCCATCATTCAGCAAATCCATCGACTGCAACG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAACTCATTTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 16618-19549 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJD02000049.1 Aphanocapsa montana BDHKU210001 NODE_307_length_35142_cov_347.176444, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 16618 36 100.0 36 .................................... CATATTTCGCCCGCTCTCTCGTCATGTACTGGGAGT 16690 36 100.0 38 .................................... GGCTCCCCGTTACCGAGGAAGTAATGCAGGAGAAACTC 16764 36 100.0 38 .................................... CTGGGTCAGCCGTTCTGTGTACTGGACCCGCGTCCATT 16838 36 100.0 38 .................................... TTAGGCACCACTAATTTAACAGTAGCCTTGTACTTTTG 16912 36 100.0 37 .................................... CGGGCTGTTGCCAGCCCGTTTTTTAGTTTGTGTTATA 16985 36 100.0 36 .................................... CCCCACCTTCTCTGGAGGATGGCCTCATGGTAGGCT 17057 36 100.0 40 .................................... TCCTTTCCGCTGCAACCGGCGGAACCATGTATATGAGTGC 17133 36 100.0 41 .................................... TTAGGAGAGATATTCCTCATACGCCCAGGAGGAGAGGTTAA 17210 36 100.0 38 .................................... TTATTGGCGGTGCCGGTAAATCGGCCATGTTCCCGCTG 17284 36 100.0 41 .................................... TTCCGGAAAGTGCCGCGCGATGCCTGGAATGACAACATGGT 17361 36 100.0 36 .................................... AGGTAAACCTAGACAACCTGGACGCGCTGTCTAAGT 17433 36 100.0 38 .................................... GGTCACTAAATGGTGATTTTCAATTTTATTGTATAATT 17507 36 100.0 38 .................................... ATCTCATTGCCTCACTATCCTTCAATGATGGATATACG 17581 36 100.0 39 .................................... TCATACGAGAGGATTAGCTTGTCTTTTCTGTAGAGTTCC 17656 36 100.0 36 .................................... ACTCGGTCGAAAACCGAAGAAGAGCGCCAATCTGAG 17728 36 100.0 37 .................................... TTTATTTACCCTGACCAGCCGGTGGTTTATGAAGGTT 17801 36 100.0 40 .................................... TTGGACATGGTTTTTACCTTTGATAAACAACAACTAACGT 17877 36 100.0 41 .................................... CAAGGGCAGCCTCCGGTAGTTCGGAGTGGTGACCATAGCAA 17954 36 100.0 38 .................................... TAGGGGAGGGTAACTAAAGGTTCAACTTGGTTAGACCA 18028 36 100.0 38 .................................... TCATCACGCCCGTGAAGCGTGAGCTCTGTTTGGCTAAG 18102 36 100.0 37 .................................... AATTCCTGCTTGTTCATACCTGTTCCTAAAAAGTTAG 18175 36 100.0 39 .................................... TGACACATCGACCAACCATTCCCGTTCAGCCGTCTTTTT 18250 36 100.0 44 .................................... TCGTCTCTACCATGCAGAGTGAGTTCGGTCGAGGCTAGAAACTT 18330 36 100.0 38 .................................... CTGATCAGATCGTTGGCCGCGCTCTGATCTAGATACAG 18404 36 100.0 38 .................................... TTATTCTTCGTCGATCAGGTCCCAATCCTGATCCTGGG 18478 36 100.0 37 .................................... GCTTCAGGCTCTGCTGCCACAGAAGCAGCAGGTTGCC 18551 36 100.0 38 .................................... ACGGGGTTTCCCCCGTCTTCTTCTTCCCAAACTATCCC 18625 36 100.0 42 .................................... TGTCGTATTGCCCGCCTCTATCAAAGCAGGCCGTCCCCGCGT 18703 36 100.0 37 .................................... TGCTGGCCCCGGTGCCCCGGGGGTACACCCAAATTGT 18776 36 100.0 38 .................................... CCAGGAATACCTCGGCTTTACCGTCCACTCTCCGGGTC 18850 36 100.0 38 .................................... TCGTGCCGCACCGATTTTGGGGGTGCCGGTGGGCAATT 18924 36 100.0 37 .................................... TTCCTTGCGTTACTCACTTGATAGTAGCCTAGAGGCT 18997 36 100.0 38 .................................... AGCAATCGCGTAGGGGAGACACCTGCGTATATCAAAAA 19071 36 100.0 37 .................................... TTTACTGTTAAGTGGGGAGGGTGTCCCGTGTGGATAC 19144 36 100.0 37 .................................... GCTTGAGAGGTTAGTCTGGCCTTGACTACCATCACTC 19217 36 100.0 39 .................................... TACTCTTAGGATTTGCGTCGTGCGTTGTAATCTTTAGGA 19292 36 100.0 39 .................................... GTTCAAGTCGTGACTCGCGGAGAAACTACGATCTCTGTG 19367 36 100.0 38 .................................... CGATCGCTCAGTTGAGCTTTGGTCCAGCTCTCGCATGG 19441 36 100.0 37 .................................... TATAATGTCCAAGTACAAGTATTTGATGGTAAAACCA 19514 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 40 36 100.0 38 GCTGACCGCTTGCCTTAAAGCGGACTCATTGGAAAC # Left flank : CCATTTCATGGCTGTTTAGCAATTTGTTTACGATCCTGCTCTGGGGTACGAGCCTTATTTGATTCGCTAGCGGAGGAGGTGAACTCTATGCTGCTATACGTGATCACCGATGATGTTCCAGATGACCGTCGTCCCAAGAGGGTATCGGATTTACTGGAGGGGTATGGTCAACGGGTTCAGTACAGTGTGTTTGAATGCATTTTGTCTGAACGAAAATATGCTGAGCTTCAGCAACGGTTGCAGGGACGGGTGAAGCTGAAGGAAGATTCTATCCGGTTTTATCCTTTGTCAAAACACACGTTGGGTCGCGTGGATATTTGGGGTGGAGTTGAGTTAACCCAGGTTCAGGGTTCAGTTGTGGTTTAGGTGCTCGATAGCTTGCTAATCAAGGGTTTTAGGAAATTATGATTGATTTTTTTCAACTCGTTAAGGTGGATTTTGCAACCTGCTCGAAATTGGCACTTGAAATCCTTGCTGTGATTAGGTTCTAATGGGGGTGG # Right flank : CGGAAGCTTTTGACAGTGGCCGTTCTTAGGGTCTGGGGGCCGTCTCTTGCCTTAAGGCGATCGCAAAGTTGTCAGTCCCGATCGCCGTGCCCGTCGCTAAGATCATTAAGGTCTCTAATTTCAGCCTCTATGTTTACAGCGATCGCCCAGGACTGCGGCTATCAAGATCTCAGTTACACCTACGATCACGATCAACTCCTCGAACTTGCCGAAATCCACCAACCCGGACGGCTAGAGCAAATCACCCAAGAACGCGCCCTCCAAGACAGGCGCACCCCTTGGCACATCATCCCCTCCAAAAAAATTATCGACTGGGTGTATCGCCTCGACTACATTTGCGCCCTGGACAGCAACAGCATCACCTTTGGATTCGATGCCACTGAAATCCCTGAGCGGGTCGCCTCCAAACAGCAAACCCTCAAAACCCTGCGCCCCCTGTGGCAATCCCTGGGCGTCTGCAAAGTGGCCGTTGTCCTCCTAATCCCGCCCTCCTCCAGCCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGACCGCTTGCCTTAAAGCGGACTCATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 13484-12478 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJD02000052.1 Aphanocapsa montana BDHKU210001 NODE_364_length_28282_cov_358.195497, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 13483 36 100.0 38 .................................... TAATCGGATCTCGTCAAGAAGCTCATCAACTTCTTTTT 13409 36 100.0 39 .................................... TGGGAAAGAGAACCCTCGAGCTTCAAGCTCGGAGGATTT 13334 36 100.0 39 .................................... CTTGGATCCGACCGTAGGGAGGCCGGGATGCCCCCCTGA 13259 36 97.2 36 ............................G....... TCTGGGATTTCATCCCAAAACCCGACCAACCTATCT 13187 36 100.0 36 .................................... TTTACACTGACTTCATCTCCTCGAACAGCCTGCCAA 13115 36 100.0 37 .................................... ACCAAGACATGCCTCATTAACGCTGGCCAACCGGCAC 13042 36 100.0 37 .................................... GAGATGATACAACGAAGAGTGCCGAAAGAATGACCGC 12969 36 100.0 39 .................................... GCGATGCCCACCGAAGCAAGTGGTAGCGCGATCGCCATC 12894 36 100.0 44 .................................... TGGTAAACCTCCGGAGATTCTTCTCCGGTCGGAAAGACGAACTA 12814 36 100.0 38 .................................... TTCTTCACCGGAGGGGAACACGAACTGCCAACCAACCC 12740 36 97.2 39 .......A............................ TCGCCTCGGAGATCGTGAAGCTTTCGAGTGGTAACACGG 12665 36 97.2 41 .......A............................ TTTTATTGGCCTTGGTCAACAGGGCCTTGAGTTGCCTTACC 12588 36 94.4 38 .......A.T.......................... TAGCGGTACACCGTAGACTCTGCAATTCCTGCCCTCTC 12514 36 91.7 0 .......A......................G....A | G [12485] ========== ====== ====== ====== ==================================== ============================================ ================== 14 36 98.4 39 GTCGCCCGACCCATTCCCCCGAAAGGGGATAGAAAC # Left flank : CAATCATATCTGAGATTAGAAAAGCCGTTTTCCAATGGCGATCGCGCCTCTGCCATGCCGCTGCAGGATAGAAATGCCCTGCAGGTGCAGCCCATTCCCGGATTGCCTCAGGGATCGCGGTAGCCAGAATCCTCCCAATGTAAATTTTTCTTCATATTTTCCAAAATGAGTGAGGTAAAGCGGGTGTTTCTGGAATGTTTAGTAGCACAAATAAAGCTCTAGTCGCTGACACAGTAAGGATTCTCGCGAATTAGAAATAAAATCTTAAGGGATGGAGAAGGAAAGATTTAATCCTCTAAAATAATTGAGTTCACGGATGTCCCCCGATCCTTGAAAACCGCATAACTTCGTTGACCTCTGTGAAGTCATTGATTTTACAGGGTTTGATAGGCTAACGAATTCCACTTGTTGGAAAATTTTGGGTCTTATTGACAGGTTATTTAGACATGTGTGAAAATCGCCAATTCGAGCCTTACTAGGTAAGGGTTTCAGCCGGTACT # Right flank : TCAAATAATGATGGCAATATCGGGCGGTTCCGGCTTTTGACTCCCAATCGTCAACACATAGTCGATCGCCTTTAGCTCCTCTGCCGTGGCCCCGAATTTCCAGTAATAGGCTGGCCAGTCGTCTTCGGGGGGCATCCGTCCTCCTGTGTCTCCAAATTTCTCCTATGGTGCGATCGCCTAGCTCAAACACGGCAGCATTTCCCCCGCGATTGCGGTTGCTTCTGCACAGAAAAACCAAAAGTGAGCCAATCCAAAGCTAGTTCACCCCATATAGACTAATCATTAGCCCGCAGAGTATGATTCAGGCACGATCGCCCTAAAACCTGAATGCTGACTTCCACCAAAGACCTTTTAGAGAAAGCTCAAAAGTACTCCTACGCCGTGGGTGCTTTCAACTTATATAATCTTGAAGGCGCGAAAGCAGTGGTCAACGCAGCCGAAGCGGACCATAGCCCCGCAATGATACAGGTTTTGCCTCATGTCCTCCAGTACGGTGGGGC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCGACCCATTCCCCCGAAAGGGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 20790-18977 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJD02000052.1 Aphanocapsa montana BDHKU210001 NODE_364_length_28282_cov_358.195497, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 20789 36 100.0 39 .................................... GCACTGTGCATATAAGTGGAAGTCGAACTTTTCGGGATG 20714 36 100.0 36 .................................... AGGAAAATCCTCCCCATTCGTGTCTGGTTGCCCCTG 20642 36 100.0 37 .................................... CTTCTGAACGGTTGTTCAAGATAGATAGATGAATCCG 20569 36 100.0 35 .................................... TTGAATTCTGATGGCTTCTGGGGATTCAACTTAGA 20498 36 100.0 40 .................................... GTCATCCAGCATCTGCTGAGTCGCCCAATTCTCCATTGGG 20422 36 100.0 34 .................................... TCACCAAACGGTAAGTCTATAGAAATGTTCCAGG 20352 36 100.0 35 .................................... GACAAACTGCTTTTTGTCCGCGCTGACAACTAATG 20281 36 100.0 40 .................................... AAACCGCTTTTTGCCAAGGGATTGTTGCGTCAGGTGCAAA 20205 36 100.0 38 .................................... CGCTCGACTGGTAGCGATTAACAGTCAAGACCGACGAC 20131 36 100.0 42 .................................... TCTCTTTTTGTATCCTGATAACTAGACTTGGAACTGCTACAA 20053 36 100.0 37 .................................... TAGTTCCCACATGAGAAGCAGCCACGCCGTGGTGACC 19980 36 100.0 41 .................................... TGGGATTCGCTCTCTATTCTCAAAAAGGGCCGTCCCGCTTG 19903 36 100.0 40 .................................... GCTTCCGGCGAGAACCGGAGTGGCCATAAGTGTAAGGGGT 19827 36 100.0 38 .................................... CCGGTGCCGGAGGTTTGCTCCACCCGCCGCTATCCATC 19753 36 100.0 39 .................................... TCCATAATCCTTGCGGCCTCGTACCTCCTCTATCGACGG 19678 36 100.0 36 .................................... ACGTTGTGCCCGCCCAAGTCGTCGGTTAATGGTCAC 19606 36 100.0 37 .................................... AGTCGTGCTAGCTGGGATGAGAGTTCTTTTTGGTCAC 19533 36 100.0 38 .................................... TCCACTCAGGGAAATCTGGAATCTCACTGTTGAAACTT 19459 36 100.0 41 .................................... ACTGATTGGATAGGGAGAGTTCTGCACCGATGGCGCGACTT 19382 36 91.7 40 ..T............T...T................ CGGATTGGCCCAGCCCTTGAGCCGATCATTCAGAAGGCGA 19306 36 100.0 38 .................................... AGTTCGTCGGAATTACGCCACTGGGCGACAAGACTTTG 19232 36 97.2 38 ....T............................... GGCAATGGCTTGATAGTCGGTTTCTTTGACCTTTTTGG 19158 36 100.0 38 .................................... AAATCACGCTGAGGCTTTGTGCAGGCCATTGTCGCTTC 19084 35 86.1 37 ..TG...A...-...................A.... TTCTCATCACCCGTGAACGTGGTGATGTCCAGATCGA C [19071] 19011 35 72.2 0 ..TG...A.T.-..CT.............C.TC... | ========== ====== ====== ====== ==================================== ========================================== ================== 25 36 97.9 38 GTCACCCGACCCATTCCCCCGAAAGGGGATAGAAAC # Left flank : TGGGAAACTCAACGCCATGATTGGATCGGAAGGGGTTGCGTTGCTGTGATTCTATCAACTGGGTTGATCCAAGCAGGTAGAAGATGATGGCGTTGAAGAGGTATTTTCGAGGCGATCGCCCCATCGCACTGGCCAAAATGTAAAATTTTCATGACATTTTTTGAAACTCTCGTTTGAGGTATCAAGTTTTACGCTTTTCCCTGACAGGATAAGTCGCTGCTTGCTCCTGTCCTACAAGGCTTTTCAGGAATTGCAAAAACTTTATAAAGAGATGGAAGCACGCCAGTTTGCTACTCTAAAATAATTACATTCACGGATGTCCCCCGATCCTTGAAAACCGCATAACTTCGTTGACCTCCGTGAAGTCATTGATTTTACTGGGTTCTATAGGTCAATGAACTCTCTTAATTGAGAATGGCTAGGGTTTATTGACAGGTAATTGAGACATGCGTGAAAAGTGCTGATCCGAGCCCTGTCAGGTAAGGGTTTCAGCCGGTACT # Right flank : ATTTACTGGAGAAAAATGATGAAAACTCTAAATCCCAATCCGCGATCGCCCCGCAGCCTGGAGATCTCTAAACTCCAGATATCCACTACTTTTCCCAGAACAGAAAATAGTGCAGCAATCTTTAGGCCGAGCGCGGGGAGCTGTATGGCGACCCATTCTGGCTGTGGCGGCCAATGTAGCCTGCCTGCGGATGGACATCATTGGCATAACTGCGACAGATGTGGCCAGGGGTTCGTTTAATTGCGCGCTAACTGCCACTCCAACTTCTCGGGAGGGATTCAAATGCTGAAATTCGCCCCCACTAGTCTTCCAACCCCAAAGGCTCAGATCCGGTGTGGTCTTGGCCCCTGTCGATTGTGCTCCTGTTTTGCCTTTAGAGGATCTGGCAATATTTGCGAGGACTGCGGACACCATTACGGAGACCACACCACAAAGCCGTTCCTTGACCCAGGCCAGGTAAAGGCTAGGACAGCGCATTGGCAAATTCCCCCCACCATAGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCCGACCCATTCCCCCGAAAGGGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 24954-27057 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJD02000054.1 Aphanocapsa montana BDHKU210001 NODE_372_length_27640_cov_369.870043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 24954 36 100.0 35 .................................... AACAAATTCTGACTTGGATCAAAACCAAGAAGGTT 25025 36 100.0 36 .................................... AGAAATCTTTGGGGATAAGGATGCGAGTGCTGGGTG 25097 36 100.0 35 .................................... GAACGACTCACGGATGAGTTAGGTGCAGCACAAGA 25168 36 100.0 37 .................................... CTTGTGCAGATTATTAGCGCCGTAGCGGAGCAGGAGC 25241 36 100.0 35 .................................... GAGCCATTTTCCTCATAGGCTTGGAGCACTTCTTT 25312 36 100.0 35 .................................... AGTATTTAAATTTTTTACAACTTTATACCCTTTGT 25383 36 100.0 35 .................................... TATCAAGTAATAGAGGGCTGACCGCAGGGTCAGCC 25454 36 100.0 35 .................................... GGCATCAATCAGGAGCCGACCTGGGATGATTTTGA 25525 36 100.0 35 .................................... AGGGGGTTATTCCCTGACCTGCAGCGATCGCCCCT 25596 36 100.0 35 .................................... AGTAATCTACACGAAACTGTATGAGAGGATAACGC 25667 36 100.0 35 .................................... CACAAAGATCAAGCCATCCTCAATGAGAGCCTCGA 25738 36 100.0 35 .................................... TCTCAAAGATCGCATAGATCCGTAGAGATCGCTTT 25809 36 100.0 35 .................................... GCGACCTTGTCTGGGTCTGCCTTAGAGGTCCGCAA 25880 36 100.0 34 .................................... CCAACGGTCTCTAGCGCTTCATGAAGAATATCGC 25950 36 100.0 37 .................................... TCCTCTAAGGCGCGTTCAGAGGCCTTGTCGATCACTC 26023 36 100.0 35 .................................... AGAGATCATCTCACCAAAGAGAACGGAAAATTCAT 26094 36 100.0 36 .................................... GGGACACAACCAACCCAGGAGCCAACGTTCGCGCTC 26166 36 100.0 35 .................................... TTCCCACAAATCATATAAAATTGCCTCATAGAGTA 26237 36 100.0 34 .................................... CGGTTGTACGAAGAATCGCTGCCCCACTGGGCTC 26307 36 100.0 35 .................................... CGCTGATATCTAACGTCTCACCAGCAGCGGTAGCA 26378 36 100.0 36 .................................... ACCGAGACTGAGCTACGGGCTAAGCTCACTGGACAA 26450 36 100.0 35 .................................... AACAAAGCAATCATTTACGGTGAAATGATTTTTGC 26521 36 100.0 35 .................................... ATTAATACCAATAATTATACGGCCAATAATTTTGG 26592 36 100.0 36 .................................... AAAAACTTCTCACGAATGCCGGGGATCGTTACGTTT 26664 36 100.0 36 .................................... ATTATCCTGTTTGGGGTATCACTGCTGATCAGTTTT 26736 36 100.0 35 .................................... TATATAGCGCAAGGGATACAGGCTAAAAACCAATT 26807 36 100.0 35 .................................... AGCGATCCTACTTTTTCAACCTCACAGGCGTTGGG 26878 36 100.0 35 .................................... GAATGGAACCCTGCGGAGTGGACCAAAGGGAAATG 26949 36 100.0 37 .................................... GTTTCAGGCTTTCCCGGCTCCACTGGCTAGTTTGGTG 27022 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ===================================== ================== 30 36 99.9 35 GTGCCGAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Left flank : CGCTGGCGACGGGCCTACAAGTTACTCAAGGGATATGGCGGGTCGGTGCAGCTTTCGATTTTTCGGGCTTCGTTGAGTCAGCGCGATCGCGAGAAGCTGCGCTGGGAGCTGGCAAAAATCTTAAAGCCAGAGGATGATTTGCTCATCGTAGGGCTATGCCATCGCTGTTGTGAACGGGTGCCTTTGTATAATCGTGAAGGGGTTTGGGAGACAGCTCAGCCCAGCTTTCGGATGATTTGACAAGCATCGCTGCATGTTTAGGGTGCGATCGCGGTTTTAGAGGCGCGAGGGTTTATGAATAGGAGGGTTTGGGGTGTTAAGAATCGCGATTGGTGCATGCAAGATGGCTATAATGTGGGTTAACCATTGGTTCCAGGTGTGTTTGTGAAAGCTTGCAATAGGGCATTGAGCCGGATGCGTGGGAAATTTTCCAAAATAAGAGGACGTTCCTTGCAAAGTTGGTCAACAATCCCGAGTCAGTCGGCTTTTCACGACGCGCC # Right flank : TCGATTTGAGGTGCATATGGGATGGTAGCGGAAGCTCTGATTTCGCGATTCTGTTGACCTCAATGAATTGACCTTGGTTTTACCCACCGGCTCACTCACTGATAAGCAAACGTTAGGGATCTTAATTTTTGAGCAGACCCCAAAGCGACAATTGACCAGATCAAAAAGTTGCTTGAAGAGAAGCCGCACAACCTGTGTTTGTCCAAAGTAGGTTCAGGATATTTATGTTTTGCAAAACTTAGGACTCACTCAAAAGACTTACAAGGTACACTAACTGGAAGTTAATTGAAGTCCCACTCTGGATAAAATCAAACTTGTGTGTATTCGGTTAATAATCTCCTCAAATAGAATATTATGAGTATCTTTCAGAACTTTTCTGGCGGCGTTCAGGGCCTGGTTGGGGAAGCGGGAAAATTCCTTGATCAGGTAAAAGATAATAAAGAATTTATTGAACTAGCCAAAAAGCTTCAGGTAGAACCGTTCCTGATGGCCCTCGATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCGAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //