Array 1 5328-3363 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBKW010000015.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 5744 contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 5327 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 5266 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 5205 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 5144 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 5083 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 5022 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 4961 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 4899 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 4838 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 4777 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 4716 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 4655 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 4594 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 4533 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 4472 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 4411 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 4350 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 4289 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 4228 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 4167 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 4106 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 4044 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3941 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3880 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3819 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3758 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3697 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3636 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3575 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3514 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3453 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3392 29 96.6 0 A............................ | A [3365] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22952-21459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBKW010000015.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 5744 contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22951 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 22890 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 22829 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 22768 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 22707 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 22646 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 22585 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 22524 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 22463 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 22402 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 22341 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 22280 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 22219 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 22158 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 22097 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 22036 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 21974 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 21913 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 21852 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 21791 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 21730 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 21669 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 21608 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 21547 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 21486 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //