Array 1 26-1090 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFP01000306.1 Streptomyces sp. CT34 Scaffold12_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 26 37 100.0 37 ..................................... GTGCTGACCGAGGTCGGCACGGGCGAGCGATTCGAGA 100 37 100.0 36 ..................................... CCTCTCGTCCACGCCCAGGGCTCGGCGCGCACGCTC 173 37 97.3 35 ...........G......................... CCTCCTGATCAGCTGACGCCGGCGGTGGCGCGGTA 245 37 100.0 38 ..................................... AGCGTGGGGCGCGCACCGCGGTCCACCGGCGACCGGGA 320 37 100.0 37 ..................................... CCACGACCGAGAAGCTGATCCAAGCCCTGACCGACGG 394 37 100.0 37 ..................................... CTGTACGTCGTGCACGGCGAGCACGAGTACCTGCCCG 468 37 100.0 35 ..................................... GATTGAGGGTGTCGCGAGCATTGAAAAAACGGCAG 540 37 100.0 36 ..................................... CTCACCGCCCAGGGGGGCCCGATCGTCCACCTCGTA 613 37 100.0 36 ..................................... GCGAGCTGCTTCTTCGATCGATCGGGGGTGCGCCGG 686 37 100.0 36 ..................................... GCGATCATTGCCGGGGCGGATCCAGTCGGGGAGCAG 759 37 100.0 37 ..................................... GCTCTTGTCCAACTTCCTGCGTTCGGCGTCATGCCGC 833 37 100.0 38 ..................................... GTCAGGCACCGGCGGTCAACCGACTGCCACCGGCAAGG 908 37 100.0 37 ..................................... ATGTAGGACAAAGCGAACCCGGCGCCTCCAGCGGACG 982 36 97.3 36 ..........-.......................... CATCCGGGCCAGGTCGCCGACGCGGCCGCGGGTCGT 1054 37 97.3 0 ..............T...................... | ========== ====== ====== ====== ===================================== ====================================== ================== 15 37 99.5 37 GTGGCGGTCGCCCCCCGGGGCGACCGAGGATCGCAAC # Left flank : AGGCCAACATGGCCCAGGCGGACGGG # Right flank : CTCGCCGAGCAGCGAGAACGCCATGGGGCCGACTCCGCAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCCCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCCCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.10,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [11.7-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2397-57 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFP01000299.1 Streptomyces sp. CT34 Scaffold5_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2396 37 89.2 37 ..........TT...T...............T..... GAGTCCACCAACCTTCGACCGCTGATCGGTGGCGAAG 2322 37 91.9 35 ..........T...............G.........T ATTGTGCCCTGTACGCCCGGGCGAGGAAGTCCGGT 2250 37 81.1 40 C.........T..T...T.C...T.......G..... ATGAAGGAATAGCTTGGCTTTTGGACTGCAACACTTTGCC 2173 37 91.9 37 ...........T...T.C................... CTCTCGGCCTTGACCGCGTCACGAAGCTGCATCGCGT 2099 36 94.6 36 ..........-.............T............ GCGGAAACCGAAGAGGCCGAGCCCGTGATGGAGGAC 2027 37 100.0 38 ..................................... GTGCAGTGTGACCTGGACATTGTCGGGTCGTCTTCGCC 1952 36 94.6 36 ..........-.........................T GCCCAGGCCATGGGCTGGATCCCCGACCTCTACAAC 1879 37 94.6 37 ..............T..A................... CCGGCTGGCCAGCCGGGAAGAGGCCGCACTGCTCGAC 1805 37 97.3 35 ...................A................. AGGAACTGGTCGAGGCTGGCCTCGTCAAGCGCGGC 1733 37 83.8 1 .............................TGA.GG.T C Deletion [1696] 1695 37 94.6 37 .C..................T................ CTTTGCCATTCCGTCACAACGGGTGCACTCGTGAGAC 1621 37 91.9 38 ..........T...........G...........G.. CATGTGCACCGCGAGGTACTGGGTGGCCACCCAGCCCG T [1608] 1545 37 97.3 36 ...............T..................... AACAGGACCAACACCCTCCGCGCGACAAAGACGGGC 1472 37 91.9 38 .......G.....T...A................... ACGTGCACCACGATCTTGTCGGCCAGGCCATGCGCGAG 1397 37 86.5 34 .............T.T......G.T...........T TTGTGCCTTGTACTTCCGGGCGAGGAAGTCCGGT 1325 37 75.7 40 C.......T.T.TT.T.......T...T...G..... ATGAAGGTACAGCTTGGCTTTTGGACTGCAACACTTCGTC C [1305] 1247 37 83.8 35 ...........T.TTG....T.G.............. TCTACTGCCCGTTCTCGATCTTTGGTGACGGACTG 1174 37 89.2 37 ............G..G....G............G... CTTGAGGAGTCGGGAATATGGAGTGCCGATGGCTCGG 1100 36 89.2 36 ...............T...-.A..T............ AAGTCACCTCGGTCCGCGATGTGTTGGTATATGTCC 1028 36 89.2 37 ...........TT..T...-................. TTCAAACCCGGCCGTGGTGCCGAGGCGCTGTGCGAGG 955 37 94.6 35 .............T....C.................. GCTGGCATCGCCCTCAAGACCGACGCCCCGGAAGC 883 37 97.3 36 ...............................T..... AGCCGCTCCTCGGGACCGCGCTGGTGCCACCGGGGC 810 37 94.6 37 ........T................A........... GTATCGGCTCGAAGCCGGCACGCGGCCTCGATGTCGG 736 37 91.9 35 .............T.T.............G....... AACGGAGTGGCTTGGGCCTACCAACAGCTCTTGAT 664 37 86.5 36 .............T.T....T..TT............ AACTACCCGCAGAAGGCGGGCGAGATGGTGGATACG 591 37 91.9 37 ..........T....T..........G.......... AAGGGCTGCCTCAACGAGGGCGGAAACAAGTACCCGC 517 36 81.1 37 ...........T...T-.A..AG...........G.. CGCGGGGCTCGTACGAAGACGGTGCCCCGGCCCTCGA 444 37 86.5 37 .......A....TT.T...................C. CCCGACAGAGTCACGCACTGAGCACTCGTCACCGGGT 370 37 91.9 19 ...........T...T......G.............. CGCAAGGCCGGCATGGACG Deletion [315] 314 37 70.3 36 TCAA..A...TG.TTG...............T..... TTCTGTGCTGTCATGGAGCCCGGCCTGAGGGCGCCG GAG [298] 238 35 91.9 37 ..........--...T..................... TCCGTCCCGCGGCTGTACGCGGCGCTGCTGAACGCCT 166 37 100.0 34 ..................................... CTGGACAGTGGCTGTCACACTCTCAACCGCGAAG 95 37 75.7 0 .C.TG.CGGT.G..........G.............. | TT [78] ========== ====== ====== ====== ===================================== ======================================== ================== 33 37 89.8 35 GTGGCGGTCGCCCCCCGGGGCGACCGAGGATCGCAAC # Left flank : CAGGGCGTCGGCCAGACTTACGACA # Right flank : CGGCTACTGGCCCGAGCCGTGCCGCAACTGCGGCGAGGTGGCGGTCGCCCTCCGGGG # Questionable array : NO Score: 4.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:-0.11, 8:1, 9:0.10, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCCCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCCCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.30,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [32-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1215-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFP01000304.1 Streptomyces sp. CT34 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================ ================== 1214 37 91.9 35 ............CT......................T ACCGTGACCCGCCCCACGGGCGAGCCCACCGCCTA 1142 37 100.0 37 ..................................... GTCAGGTACGACGCGACGGTGATCGGGTCGACCAGCT G [1126] 1067 37 91.9 35 ............CT...............C....... CCCCTCTCCACCTGGGAAAAGAGGCCCCCAGTCCC 995 36 91.9 36 ............-.....A..A............... GCGATGGCGATGATGTTCTCGCCATCCGCGAAGCGC 923 37 91.9 28 .......C....C..T..................... AAGGAGCGGCGGGCCGCGGTGATCGCCA 858 37 83.8 35 AC......T...CT..A.................... TCAACTCGATCGGGATGACCGGTGCCGGCCTGGTC 786 37 91.9 35 ............CT.........T............. CGCACGGGCCCCCGCTTATCGATCACCAGCGCCCA 714 37 89.2 36 ........G...CT...A................... GACATCTACGCCGTTGACCGGCTGCGCGAGGCAACG 641 37 91.9 80 .......C....C.T...................... GACCCCGAGCACCGCACTGGCTCCCCGGCCGAGGATCGCAACGAGGTTAAGGACAGCCACAACAAGACGGTCGCGAATGG 524 36 86.5 36 ........A.T..-.T.........A........... AACAAGGCCGAACTCTCCGGGGCTACAGCGGTATCG 452 37 100.0 35 ..................................... CGCATTCAGGAACCCAGTAGTGCGGGGGAGTTGGC 379 37 81.1 36 .......C.C.TG.TG.............G....... GTCAAGAACGGCGACACCTGGACCATCGACAAGATC G [364] 305 37 89.2 35 ............C...A.....T.........A.... GTCGCGTGTGCGTGTGAAGTACCGGGACCTCGCCG 233 36 91.9 36 ............C-........T.............. ACGAAGTGCGCCGGCTCCGGCAGACTCACCGTCAGC 161 37 89.2 36 ............CTG........T............. TGGTTAACGCACACGTACGTGCGGTGTCCGCCGGTG 88 37 91.9 0 ......C.....C..G..................... | ========== ====== ====== ====== ===================================== ================================================================================ ================== 16 37 90.9 38 GTGGCGGTCGCCTCCCGGGGCGACCGAGGATCGCAAC # Left flank : CTGGCCCGAGCCGTGCCGCAACTGCGGCGA # Right flank : CCATGGACGCCATGATGACGCCCGCGTTGTGATCACCGCGTGGCGGTCGCCC # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-0.22, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCTCCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCTCCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-13.70,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6575581-6578742 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN708638.1 Streptomyces sp. CT34 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 6575581 37 100.0 36 ..................................... AAGTAGCCGTTGCCGCCGCTGCAAAATCCGCGGGTG 6575654 37 100.0 36 ..................................... TCGATCCCGGCCTGGGTGGCTGCGTCCCGAACTACT 6575727 37 100.0 36 ..................................... GCCTGTGTTGGCGTAGAGCTGGATAGCCGGGATGAC 6575800 37 100.0 33 ..................................... CTCGATCCAGGCGGCTCCGGGGCCGGTGCGGGG 6575870 37 100.0 36 ..................................... TTCCACTCCGGTGCGGAGATTTACGCGGAGTCGCGT 6575943 37 100.0 36 ..................................... TGATGACCCGGTGGACACGAGCAAGGCCCGGCGGTT 6576016 37 100.0 37 ..................................... TCTCACCACGGCTCGGCGGTCGCCGGCCGCGTGGGCA 6576090 37 100.0 36 ..................................... GATTCCTGTCCCCCGATCCTCGGCTGCGCACAGGGC 6576163 37 100.0 35 ..................................... CCCATGGGCCTCTCCCGTAAGTGAATCGCTTTTGG 6576235 37 100.0 35 ..................................... AGGTCGTGGCCGTGAGGTTGGAACACCGCGAGCCA 6576307 37 94.6 34 .......G........C.................... TTCCAGGCGCATGGGGACCAGCGTCACCGCGGTG 6576378 37 100.0 36 ..................................... CACTCCTCCCCCTCACAGCCATACAGGAGAAGGCCG 6576451 37 100.0 37 ..................................... GCGCTCAACGCCGCCGTCGCCGCCGCCAAGACCGGAG 6576525 37 100.0 36 ..................................... GTCAGTCCTGGGCTTCGCGGGCGCGGGAGGAGATGA 6576598 37 100.0 36 ..................................... GTATATGCCCACGTGCTGCGGCGTCCGGCGCATTGA 6576671 37 100.0 37 ..................................... AGCGTCGGCAGCGCGGCCGTGCCCGAGCACGTCGGGA 6576745 37 100.0 38 ..................................... CTCGGCATCGAAGTCACCGGGAACGCCGAGGTCAGCGG 6576820 37 100.0 35 ..................................... GCCGACGCTCGCTCCCTGAAGGCTTATGCGGGCTC 6576892 37 100.0 37 ..................................... ATCTTCGGCCTGTCCTGGCTGGTGTGGCTGGCCGCCC 6576966 37 100.0 34 ..................................... ATACCTGCGGAGTTCGCTGAAGTCGACGAGCCGG 6577037 37 100.0 36 ..................................... CTGGCCGCCGACGACCGACCAGGACCTGGCCGGCGG 6577110 37 100.0 36 ..................................... CTGTGCCTCGGAGATGAGCCACGCTGTCAGCCGGCT 6577183 37 100.0 37 ..................................... TTCTCGGCCTCGGCCTGCTCCGGCGTAGCCGCGCGGG 6577257 37 100.0 37 ..................................... AACTCGGAGGATGGCTACCGGTACACCGCCGAGGGGG 6577331 37 100.0 37 ..................................... CACAGCTTGAGCTCCGCGGCGTCGCCGGCGACCGCCA 6577405 37 100.0 36 ..................................... CGCGTGGTCGAAATCCATGTCATTCCACGCGCCCTG 6577478 37 100.0 36 ..................................... GCATGTGCTTTCGGGGTGATCTCGAACGGTGCAGGC 6577551 37 100.0 36 ..................................... CGTCCGATCGGTCCGGCCCGGCGATGGACTCCCGCC 6577624 37 100.0 36 ..................................... TCGACGCGCACGGGCCAACTGCCCTCGGACCCGCAG 6577697 37 100.0 36 ..................................... GTCACGTGACGTTGCTTGGCGCGCGGCAGCTTCCAG 6577770 37 100.0 37 ..................................... ACGATCGGCGGCGACTGATGGACGAGTGCATCCTGTG 6577844 37 100.0 37 ..................................... GCTAAAGCCTGGCTGGCTACGGAGGGAGGGGGCTCGT 6577918 37 100.0 36 ..................................... CTGAGGTGGTCCGTCCGCCTGTCGACATACCCCCGT 6577991 37 100.0 36 ..................................... GCCTTGACGGCGTAGCCGTGGGTCGTCAGCTCGTGG 6578064 37 100.0 35 ..................................... TCCGACGTGACGCTGAGCAAGGCGGCCGAACTCGC 6578136 37 100.0 36 ..................................... TTCGACGTCACCACCAGTCCCTCATCTGACAGGACG 6578209 37 100.0 37 ..................................... CGTACGCGCGGACGTCCCAGTCGGCCAGGCTGGCCAG 6578283 37 100.0 36 ..................................... GTCCAGGCCGAGCGGCAGGAAGCCGCGCATCCTGAG 6578356 37 100.0 16 ..................................... CTCGCCGAGCAGCGAG Deletion [6578409] 6578409 37 83.8 39 AAC..CA.G............................ TGGAGAGGGGCCGGGGGAGGGGAGCGGCGGGCGCTCGGG 6578485 37 100.0 37 ..................................... TCATCGGCCCGCAGGCCAACATGGCCCAGGCGGACGG 6578559 37 100.0 37 ..................................... GTGCTGACCGAGGTCGGCACGGGCGAGCGATTCGAGA 6578633 37 100.0 36 ..................................... CCTCTCGTCCACGCCCAGGGCTCGGCGCGCACGCTC 6578706 37 97.3 0 ...........G......................... | ========== ====== ====== ====== ===================================== ======================================= ================== 44 37 99.4 36 GTGGCGGTCGCCCCCCGGGGCGACCGAGGATCGCAAC # Left flank : CGTCCAGGCGCGCATCCTTGCCCGACATCTACGAGGCGATCTGCCTGGACACCTCCCGTGGACGGCGGCCTGATGGACCTGCTGTTGACCTACGATGTGGATACCACCACGCCGGAAGGCCGCCGCCGCCTTCGCCGCGTTGCCAAACTCTGCGAAGGCCATGGGGTTCGCGTCCAGAAGTCCGTGTTCGAAATCGTCTCCGACGACAAGGACCTGCTGATGCTCCTGGGGAAGCTGGACAGCATCGTCAACGCGGACTGTGACAGTATCCGTATCTACCGTCTGCCCCACGAGGGATTCGAAAGCGTCCAGACCCTAGGTATCGCCGAAGTACAGCGACACCGAGACGATCTCGTCCTGTGACGCCACCGCTTCGGAACCTCAAGCACACACACGACACGCGGATCACGCCGAAGCAGAATGACCTTTTTGCGTATCTCTGGTGTCGCCTGCCAGGTAATCGCTTGGCTCGAGTGTGGTGTTTGCGCTGCTCGGGCAGC # Right flank : CCCTCCTGATCAGCTGACGCCGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCCCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCCCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.10,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 6579896-6589844 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN708638.1 Streptomyces sp. CT34 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================ ================== 6579896 37 100.0 37 ..................................... TCCTCGGCGGCCGTCCGCTGGGCCTCCAGCTCGGCCT 6579970 37 100.0 39 ..................................... TGGAGAGGGGCCGGGGGAGGGGAGCGGCGGGCGCTCGGG 6580046 37 100.0 37 ..................................... TCATCGGCCCGCAGGCCAACATGGCCCAGGCGGACGG 6580120 37 100.0 37 ..................................... GCGCGAGAGGATGCCCGCATGCGTGACATGTTGACGG 6580194 37 100.0 35 ..................................... TCCTACGGCCGCCCCACTCTGTCTCATGCTGGAGG 6580266 37 100.0 36 ..................................... ACCCTGGCCAACATGGTCAAGGGGGCCGATGGCAAG 6580338 37 100.0 36 ..................................... ATGACCTTCAGCACGTGCACCAGTTGGCGGGCGTGA 6580411 37 91.9 37 ..........T..T..........T............ GCAGTGAGCATGAGCCACGCAATCGCGCGGAGTATGG 6580485 37 89.2 37 ........T....TT.........T............ CTAAGAACACCCGGCGCGGCCGCGAATCGCGCGCCAA 6580559 37 91.9 35 ........G....T......T................ TACGGTATGGGCATGGGCGCGTCGCCCATGGTCAC 6580631 37 89.2 35 ..........T..T..............AT....... GCGGGTCACGATCTCCTCCGCCTGCAGGTGAGGCC 6580703 37 89.2 37 ..T........T.T......T................ GTGACAGCACCCATGGGAGACCGGCCCCAGGAAACCG 6580777 37 89.2 36 .AT..........T........C.............. GACCCGGGCCTGTCGGTCCTGAAGTTGGATGAGGGC 6580850 37 89.2 37 ........T....TT....C................. AGGGTGTAGTCGGTGCCGTTGGTCGGCGACGTGAAGA 6580924 37 89.2 35 ..T.....G....T........C.............. ACCACGATGACGACGGCGGCGTCCGAGACCACCGG 6580996 37 91.9 31 ........T....T.A..................... CCAGTTCCTCACTCCTCACGAAAGGAGAGAA 6581064 37 91.9 37 .............T.T.......T............. GTCACGAAGTCCGCGTGGTACCAGTCGCCCCGACCGC 6581138 37 89.2 35 A.........T..T........C.............. ACCGACTCGAAGAAGGGCGAATGGTGTGTGGTCAA 6581210 37 91.9 36 ........T.....TT..................... TGTGTACCCGTGTGGCGCGGGCGCGTCCACCGCGCA 6581283 37 91.9 36 ..........T..T...........A........... CACTGCCACGGGTCCGCGTCCGGGGACAGCGGCGAA 6581356 35 89.2 36 ..........T..T....--................. TCCATCCCGGACAGGGACGCAGCCACCGGGAGTATG 6581427 37 94.6 37 .............T.......A............... GCTCGCACCTCCTGGGCTGTCATCTCCGTCGAGCAGA 6581501 37 94.6 36 .............TG...................... GCCGTCGCGGACACCGCGGCCAGGGCCCAGGCGGTG G [6581528] 6581575 36 89.2 27 .C...........TT.....-................ TCTACGTCGGCTGGCCGACGTACCAAG Deletion [6581638] 6581639 37 78.4 36 ......A....TT.T...C..T.....A..A...... GCGTATGAGGATGGCGGCTGCGCCGACCTGTCCGCC 6581712 37 75.7 36 .....C..T..T.T.T.AAAT................ TGGCCCTCACCGAACAACAAGGGCATGATCTGCGCA 6581785 37 91.9 37 ...........T.T......T................ TGGATGACCGACCAGGACCCGTTCGCCGAGCACCGGC 6581859 37 97.3 36 .............................C....... GTGGTCTACGTCCACGAGGACGAGCGGACTTGGGGA 6581932 37 89.2 36 ...........T.T...............C.....C. TGCGTCACAGACCCCACAAACCAGGAGCACCCCGTG 6582004 37 94.6 36 ................T.....G.............. CAGGACTACCGCGACCGCGACGCCGAGGCTCGCCGG 6582079 37 94.6 36 ......................TA............. TGCTCCCTCGTCATGCCGCATCCCCGTCCTTGTGTC 6582151 37 94.6 36 ..........T.............T............ AAGTCACCTCGGATCGCGATGTGTTGGTGTGTGCCC 6582224 37 89.2 10 ..............T.......G............GG ACCCCGTAGG Deletion [6582271] 6582270 36 91.9 37 .........A......-......T............. GTCACCTGGGCGGGCGGGGCCGAGGTCAGCCTGGCGC 6582342 37 86.5 37 .....A..........C......T.T..........T ACCGTGCTCCAGCCCCGGCACAGCGCGACCCTGGAGG 6582416 37 97.3 36 .............T....................... GACCCCGAGCACCGCAGCGGCTCCCTGGCCGAGGTG 6582488 37 86.5 36 .....C.G.......G....T..T............. GTGTCGGTCACCGCGGTCACCGGTCCCGGCGGAACG A [6582506] 6582562 37 91.9 36 ...............A.......T...........G. TCGTCAGGGACGTAGCGGCGCAGCTGCTCCCACGAG 6582635 37 91.9 36 ..........T..T.T..................... GTCTCCGCGCAGCGATCCGCGGATGGAGTCCAGCGT 6582708 37 89.2 35 ..........T..T.....A...............G. CCGGGGCACGATCTCCTTCGCCTGCAGGTGAGGCC 6582780 37 81.1 37 .C...T.....T.T.........T...A.......G. GTCTACGTCGGTACGCTGGGCCGGCCTCGTACCCGCA 6582854 37 94.6 37 .............T........T.............. ACGACTCTGAAGCCGGGGCTTCCGTCGGCCATCTCGA 6582928 37 89.2 38 ........T.T..T........T.............. ACCTTCGCGCCCACGCATCATCTTTGGCTCTTGGGAAA 6583003 37 89.2 36 ..........T.TT..........T............ AAGTACGGCGAGCATCCCCTCACCGGGGAAGTGCTC 6583076 37 94.6 36 .........A.............T............. GACTCCGAACAGGGCAACAACGGCAAGGGCACGCTG 6583149 37 86.5 36 .....A..T..T.T.T..................... GGGACGTACGCGCACAGCAAGTTGCCCGACGAGATC 6583221 37 86.5 37 A........TT.T.......T................ TTCCCGAACAAGATGGTGCTGGCCGAGGGCTCCCCGC T [6583238] 6583296 37 86.5 36 ...........T.T.A....T..............T. GCATCGGCGGTGGTGATCGACGTGCGCTGCGGTACG 6583369 37 94.6 36 .............T...........A........... TGCTACGACCCGTGGACCTGGTACGACGCGGGCCTG 6583442 37 97.3 35 ......................G.............. CCCTTCGTTCGGGTCGAAGGTGCTGGTCGGCACGA 6583514 37 89.2 39 ...........T.T......T....A........... GGCCTGGGCTACGTCGCGGCACCGGGCGGGCGGCGCAGG 6583590 37 89.2 36 ....T........TT.......G.............. GCCTATTCCCGGATCGACGCCGACCGGCGCACCCCT 6583663 37 89.2 37 ..........GTTT....................... CTTCTGGTGGGAGGGTCGGCCGCGGCGAACTACTACA 6583737 37 91.9 38 .............T.T........T............ CATGGACGCCATGATGACGCCCGCGTTGTGATCACCGC 6583812 37 97.3 35 ......................G.............. ATGGCCGGGGCCGCGACGTCTGTCACGAGAGCCGC 6583883 37 100.0 36 ..................................... TGGGAGTGCCAGAGCTGCGGCCTGGTGATGATGACG 6583956 37 94.6 35 .........T.......................G... TCGTTCCCGGCAACATCGACGACCTCGATGTCGAT 6584029 37 91.9 36 ...........T..T.....T................ ACGGTCACCTTCCTGGCCACCGTCGACATTTTCGTC 6584102 37 94.6 18 ..........T......A................... GTCATCAGCGAGGACATC Deletion [6584157] 6584158 37 81.1 36 AA....AC.A..A..T..................... AGGGCCGTTGCGGCGCTGCCCACGCGTAGTTGGACG T,G [6584176,6584180] 6584231 37 100.0 35 ..................................... CACCTCGACTCCGCCTGGCACCACGGCTGGGAGAC 6584303 37 91.9 37 ..........T.T................G....... ACTCCCGGCGAAGCCATCATGACCCAGGCCCGCTACG 6584378 37 97.3 36 ................C.................... AGCCGTACCGGCGGCACCAGCATCAACCTGCTGGAT 6584451 37 91.9 37 ...............T........T....T....... TCGAAGATGCGGGCGCGCACGTGCGGTGCGGTCTCCA 6584525 37 81.1 37 ............A..T.CA...G........T.T... CCTGCGGTGTACACCCGGTGCGCCGGCATTCTGCCGG 6584599 37 83.8 35 ........TT.....TA............T......G TGTGTGCCCTGTACTCCTCGGCGAGGAAGTCCGGT 6584671 37 81.1 40 C.........T..T...T.C...T.......G..... ATGAAGGGACAGCTTGGCTTTTGGACTGCAACACTTCGCC 6584748 37 89.2 37 .......C.....T.....A...T............. ATCTGCGCGGCAGCCACCCGCATAAGCCGAACTGCCG 6584822 37 94.6 38 ...........T...............T......... CAGTGCCTGCCGCCGAAGGAACATCATCAGCTACAGGG 6584897 37 94.6 42 ................A.....C.............. GCCCGCGTCGGCGTTGGCTCCGGCCAGAAGGTCGAGGGTGGC A [6584919] 6584977 37 91.9 35 ..............TT.....C............... AATGTAATGCAGGGCGTCGGCCAGACTTACGACAC 6585049 37 89.2 37 ..........TT...T...............T..... GAGTCCACCAACCTTCGACCGCTGATCGGTGGCGAAG 6585123 37 91.9 35 ..........T...............G.........T ATTGTGCCCTGTACGCCCGGGCGAGGAAGTCCGGT 6585195 37 81.1 40 C.........T..T...T.C...T.......G..... ATGAAGGAATAGCTTGGCTTTTGGACTGCAACACTTTGCC 6585272 37 91.9 37 ...........T...T.C................... CTCTCGGCCTTGACCGCGTCACGAAGCTGCATCGCGT 6585345 37 97.3 36 ........................T............ GCGGAAACCGAAGAGGCCGAGCCCGTGATGGAGGAC 6585418 37 100.0 38 ..................................... GTGCAGTGTGACCTGGACATTGTCGGGTCGTCTTCGCC 6585492 37 97.3 37 ....................................T GCCCAGGCCATGGGCTGGATCCCCGACCTCTACAACA 6585566 37 94.6 37 ..............T..A................... CCGGCTGGCCAGCCGGGAAGAGGCCGCACTGCTCGAC 6585640 37 97.3 35 ...................A................. AGGAACTGGTCGAGGCTGGCCTCGTCAAGCGCGGC 6585712 37 83.8 1 .............................TGA.GG.T C Deletion [6585750] 6585750 37 94.6 36 .C..................T................ TTTGCCATTCCGTCACAACGGGTGCACTCGTGAGAC 6585824 37 91.9 38 ..........T...........G...........G.. CATGTGCACCGCGAGGTACTGGGTGGCCACCCAGCCCG T [6585837] 6585900 37 97.3 36 ...............T..................... AACAGGACCAACACCCTCCGCGCGACAAAGACGGGC 6585973 37 91.9 38 .......G.....T...A................... ACGTGCACCACGATCTTGTCGGCCAGGCCATGCGCGAG 6586048 37 86.5 35 .............T.T......G.T...........T GTTGTGCCTTGTACTTCCGGGCGAGGAAGTCCGGT 6586120 37 75.7 40 C.......T.T.TT.T.......T...T...G..... ATGAAGGTACAGCTTGGCTTTTGGACTGCAACACTTCGTC C [6586140] 6586198 37 83.8 36 ...........T.TTG....T.G.............. ATCTACTGCCCGTTCTCGATCTTTGGTGACGGACTG 6586271 37 89.2 37 ............G..G....G............G... CTTGAGGAGTCGGGAATATGGAGTGCCGATGGCTCGG 6586344 37 91.9 36 ................T....A..T............ AAGTCACCTCGGTCCGCGATGTGTTGGTATATGTCC 6586416 37 91.9 37 ...........TT...T.................... TTCAAACCCGGCCGTGGTGCCGAGGCGCTGTGCGAGG 6586490 37 94.6 35 .............T....C.................. GCTGGCATCGCCCTCAAGACCGACGCCCCGGAAGC 6586562 37 97.3 36 ...............................T..... AGCCGCTCCTCGGGACCGCGCTGGTGCCACCGGGGC 6586635 37 94.6 37 ........T................A........... GTATCGGCTCGAAGCCGGCACGCGGCCTCGATGTCGG 6586709 37 91.9 35 .............T.T.............G....... AACGGAGTGGCTTGGGCCTACCAACAGCTCTTGAT 6586781 37 86.5 36 .............T.T....T..TT............ AACTACCCGCAGAAGGCGGGCGAGATGGTGGATACG 6586854 37 91.9 37 ..........T....T..........G.......... AAGGGCTGCCTCAACGAGGGCGGAAACAAGTACCCGC 6586927 37 83.8 37 ...........T....T.A..AG...........G.. CGCGGGGCTCGTACGAAGACGGTGCCCCGGCCCTCGA 6587001 37 86.5 37 .......A....TT.T...................C. CCCGACAGAGTCACGCACTGAGCACTCGTCACCGGGT 6587075 37 91.9 19 ...........T...T......G.............. CGCAAGGCCGGCATGGACG Deletion [6587131] 6587134 37 70.3 36 TCAA..A...TG.TTG...............T..... TTCTGTGCTGTCATGGAGCCCGGCCTGAGGGCGCCG 6587207 35 91.9 36 .............T--..................... TCCGTCCCGCGGCTGTACGCGGCGCTGCTGAACGCC 6587279 37 100.0 36 ..................................... CTGGACAGTGGCTGTCACACTCTCAACCGCGAAGGC 6587352 37 91.9 36 ..............TT......G.............. GGCTACTGGCCCGAGCCGTGCCGCAACTGCGGCGAG 6587425 37 94.6 35 .............T......................T ACCGTGACCCGCCCCACGGGCGAGCCCACCGCCTA 6587498 37 94.6 37 ............T..G..................... GTCAGGTACGACGCGACGGTGATCGGGTCGACCAGCT 6587572 37 94.6 35 .............T...............C....... CCCCTCTCCACCTGGGAAAAGAGGCCCCCAGTCCC 6587643 37 94.6 36 ..................A..A............... GCGATGGCGATGATGTTCTCGCCATCCGCGAAGCGC 6587716 37 94.6 28 .......C.......T..................... AAGGAGCGGCGGGCCGCGGTGATCGCCA Deletion [6587781] 6587781 37 86.5 35 AC......T....T..A.................... TCAACTCGATCGGGATGACCGGTGCCGGCCTGGTC 6587853 37 94.6 35 .............T.........T............. CGCACGGGCCCCCGCTTATCGATCACCAGCGCCCA 6587925 37 91.9 36 ........G....T...A................... GACATCTACGCCGTTGACCGGCTGCGCGAGGCAACG 6587998 37 94.6 80 .......C......T...................... GACCCCGAGCACCGCACTGGCTCCCCGGCCGAGGATCGCAACGAGGTTAAGGACAGCCACAACAAGACGGTCGCGAATGG 6588114 37 86.5 36 ........A.T.T..T.........A........... AACAAGGCCGAACTCTCCGGGGCTACAGCGGTATCG 6588187 37 97.3 36 ............T........................ CCGCATTCAGGAACCCAGTAGTGCGGGGGAGTTGGC 6588261 37 81.1 36 .......C.C.TG.GG.............G....... GTCAAGAACGGCGACACCTGGACCATCGACAAGATC 6588334 37 91.9 35 ................A.....T.........A.... GTCGCGTGTGCGTGTGAAGTACCGGGACCTCGCCG 6588405 37 97.3 36 ......................T.............. ACGAAGTGCGCCGGCTCCGGCAGACTCACCGTCAGC 6588478 37 91.9 36 .............TG........T............. TGGTTAACGCACACGTACGTGCGGTGTCCGCCGGTG 6588551 37 94.6 38 ......C........G..................... CATGGACGCCATGATGACGCCCGCGTTGTGATCACCGC 6588627 37 100.0 35 ..................................... AGCAGGGCTTCGCTCAGGTCCGGCCGGAACGTCTC 6588699 37 94.6 36 ..........T....T..................... GACATCACCGGTCAGGGCCCCAGCCACATGCCCACC 6588772 37 91.9 37 ............TT...A................... GATGGACGAGGACCTTTACATAGCGGAGCGGGTCGTG 6588847 37 97.3 36 .........T........................... AGCCGTACCGGCGGCACCAGCATCAACCTGCTGGAT 6588920 37 91.9 37 ...............T........T....T....... TCGAAGATGCGGGCGCGCACGTGCGGTGCGGTCTCCA 6588994 37 81.1 37 ............A..T.CA...G........T.T... CCTGCGGTGTACACCCGGTGCGCCGGCATTCTGCCGG 6589068 37 81.1 35 .......GTT.....TA............T......G TGTGTGCCCTGTACTCCTCGGCGAGGAAGTCCGGT 6589140 37 81.1 40 C.........T..T...T.C...T.......G..... ATGAAGGGACAGCTTGGCTTTTGGACTGCAACACTTCGCC 6589217 37 89.2 37 .......C.....T.....A...T............. ATCTGCGCGGCAGCCACCCGCATAAGCCGAACTGCCG 6589291 37 97.3 34 ...........T......................... TCCGAGCGGCGCCGGTTTCGGCGTAGCCATGGGG 6589361 37 97.3 35 ...........................T......... TCTCCGCTCATCGGGGAACTGCTCGCCCTGCACAG 6589433 37 97.3 37 ................A.................... GGCACGAGGGAGGCCGGCTACGGCCACCGGGCCCGGC 6589507 37 91.9 36 ..........TTT........................ ATCGAGGAGCACGGCGACAAGCTCCGGTTCGTCCAC 6589580 37 94.6 38 ..........T.T........................ CAGTGCCTGCCGCCGAAGGAACATCATCAGCTACAGGG 6589655 37 97.3 42 ................A.................... GCCCGCGTCGGCGTTGGCTCCGGCCAGAAGGTCGAGGGTGGC G,C [6589667,6589679] 6589736 37 91.9 35 ..............TT.....C............... AATGTAATGCAGGGCGTCGGCCAGACTTACGACAC 6589808 37 89.2 0 ..........TT...T...............T..... | ========== ====== ====== ====== ===================================== ================================================================================ ================== 137 37 91.5 36 GTGGCGGTCGCCCCCCGGGGCGACCGAGGATCGCAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGCGGTCGCCCCCCGGGGCGACCGAGGATCGCAACGCCTCGTGGCAGGGACGACAGGGCGGGTCGTAGACCA # Right flank : CTCCGTCAGCGTCACCCCATGGACGATGCGGTGGACCGAGGGTCGCAACGGCTTCGTCTCCAGCCGCAACCACTCCTCGTCCAGGTGGCGGTTGCCTCTTGGGGCGACTGGGGTGCTGTTCGGCGTCGAGGAACTACCCCGCACCCGCGGCGGTAGTTCCCGTGCTCGGCACCATGCGGGACGGCACAGCCAGTCGTCCCCGCACCTGCAGGGGAGTTTCCGCGTACTGGACTAAACGCTCGGTCGCAGGCGGACCTGGGCCAGTCATTCCGCGATCGGTCAAGTATTCGAAATGATGAGTGAATCACCTTGGGTGTTTCGCATGCACCTAAAGGGAAGGCTCGGCTCCGCTTTGCAGGCAAATAGGTCGGCGAGCGGAGTTGCCTGGTCGGCGACACCTCCGCTGGTGCATGGCCTGGTGTTCTCGTGGGCGCCGAGGAGGGTCCGGCGCTCGTGTGGCCCATGTTTCGCTTTCGCGATTTGCTGTAATTCCCATATGC # Questionable array : NO Score: 4.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.10, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCCCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCCCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.10,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [153-154] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //