Array 1 68-1316 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCSO01000040.1 Lacticaseibacillus paracasei strain DPC4206 DPC4206_Contig40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 68 28 100.0 33 ............................ CTATACTTTTACTGGTGCAGGCAAAACTTATCC 129 28 100.0 33 ............................ TGGGCGAACCGTTGCACAGGACACGCCACAGCA 190 28 100.0 33 ............................ TGGATTCGTCAAACTCTTAGTTTTGAGAATGAC 251 28 100.0 33 ............................ CCATAGAAAGAGGCACAACGACACTCCCACCAG 312 28 100.0 33 ............................ CACGCTGAAACAGATTTCGGTTGATGTTGCTCG 373 28 100.0 33 ............................ CAGAATTAAAATTAATGGCGCCAATCTTATCAA 434 28 100.0 33 ............................ CAACGCTAGACGACGCAACTCAAGAACAAGTCG 495 28 100.0 33 ............................ CAAGCTAACCTTTCGCCTAGATCGTCTTGATTT 556 28 100.0 34 ............................ CAAAAGTCTGAACGCGTTTATCATCTCGATTTCA 618 28 100.0 33 ............................ CCATAGCGGCGTCAACATTAGTACGCTCAATCT 679 28 100.0 33 ............................ GGGGATGACTGTATGAACGAACGCAATGAAAAA 740 28 100.0 33 ............................ TTTCATGGTGCCCTCCTTATTGCTGTGGAGCAA 801 28 100.0 33 ............................ CTAATGTTACTGATATTTTTATCAAGCCATTTG 862 28 100.0 33 ............................ CACTTTGTATTTTCCAGCCATTTCCCACTTCAC 923 28 100.0 33 ............................ CACTTTGTATTTTCCAGCCATTTCCCACTTCAC 984 28 100.0 33 ............................ CGCTGTCTTGCCTCACGCACAGTTTCAGCAGCC 1045 28 100.0 33 ............................ TGGAGATCAAGATGAGTATTATGCATACGTTGG 1106 28 100.0 33 ............................ CGACTGATACTTCTCTGAACCGGTTCATTTGTG 1167 28 100.0 33 ............................ TGCCATTCCACAGTCCGCTGAAGAATGAAGCGA 1228 28 100.0 33 ............................ CACACGATGACGAGCTTGGCAGTCACTCGGTTA 1289 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 21 28 100.0 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : GTCAGGATCANCCCCGCACATGCGGGGGTGATCCTGACAAGGCCAATACGGCTTAACAAAACATCAAG # Right flank : CCCTCTGCCCAGTCACCAATCGTGTATCCAAAAAAGGGTTCTGGTGCAAATTTTCCTCGCTGACTTGATTTTAGTATACTGGGTGCCAAGAAACGAGGGATTGCGCGCATGAATCACTTTAAGGGACGCCACTTTCAAAAGGACATCATCTTAGTAGCCGTTGGCTACTATTTCAGATTCAGTCTCAGCTATCGTGACATCGTTGAATTGCTTCGGGATCGGGGTATCACTGTTCATCACACCACGGTCATGCGTTGGGTTCATCACTATGGCCCCATCTTTAAGGCTCTATGGCGTCGGCATCAAACAGCTCACGCTAAAAGTTGGCGAATCGATGAGACCTATATTCGAGTTAAAGGCCGTTGGGCCTATTTGTATCGCGCTATTGACAGTAACGGTTTGACCATGGATTTTGAGCTACGAAAACACCGCGATTATACCGCATCCTATCACTTTTTGAAGCGTCTCTTGACGACCAATGGTCGGCCTGATCGATTAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 11795-12617 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCSO01000040.1 Lacticaseibacillus paracasei strain DPC4206 DPC4206_Contig40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11795 29 96.6 32 ............................T GAACGCGGTTCTAATGTCTGACAACAACGGCG 11856 29 100.0 32 ............................. ACGTCCCGCTTCGTCTCATTGTTCATCGTCAG 11917 29 100.0 32 ............................. GCCTCGGCTTGATTGAGCACCTGAGCATACCA 11978 29 100.0 32 ............................. CCAACTAACAGAGACTTTTTCATAGTGAATTC 12039 29 100.0 32 ............................. GAAGTTACGCCGCCACAAACGCCGAAGCTTGT 12100 29 96.6 32 ............................T CAGTCCTTCGTCCAGAATGTCCTGAATCACGC 12161 29 100.0 32 ............................. TGTGTTTCCCATAGCACCCAACCCCCAATCCC 12222 29 100.0 33 ............................. GNCTTTGTATTTTCCAGCCATTTCCCACTTCAC 12284 29 100.0 32 ............................. ACTTTGTATTTTCCAGCCATTTCCCACTTCAC 12345 29 100.0 32 ............................. GGAGATCAAGATGAGTATTATGCATACGTTGG 12406 29 100.0 32 ............................. GACTGATACTTCTCTGAACCGGTTCATTTGTG 12467 29 96.6 32 ............................T GCCATTCCACAGTCCGCTGAAGAATGAAGCGA 12528 29 100.0 32 ............................. ACACGATGACGAGCTTGGCAGTCACTCGGTTA 12589 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.3 32 GTTTTCCCCGCACATGCGGGGGTGATCCC # Left flank : GAACGAGATGCAATTATTGCCATTGGGGCGGTAAAAGGACCGTCAGTTAACGAAACCGAAAAATTCACTACCTTGGTGAATCCACGAAGGCCGCTTCCATCAACGGTTGCCAAGTTGACGGGATTGTCGGCGGAGGAGTTGGTTGCCAATGGGATCAGTCTGAGCGAGGCAGTGCAGGCCTTACGGGATTTTACCGGCTCGCTCCCTTTAGTCGGATATAATCTGCGTTTCGACATGGGATTTCTTTCGGCAGCGGGTCGTGAAACTGGGTTAACGTCTTTTGGGAATCATACTTTTGATTTACTACCGCTTGTTAAGAAATCCAGTCGCTTTCTGGATAATTACAAGCTTAGTACAGTGCTGGCACATTATCAGATCGATAACGAGCAACCGCATCACGCGTTGTCTGATGCGACGGCAACAATGGCACTGGCGGACAAACTCATAAAAAAAGGAATCTTAACGATTGGCAAACGTTGATGGGATAGGGATTTTTTAGT # Right flank : CTCCGCCCAGTCAGCTATCGTGACATCGTTGAATTGCTTCGGGATCGGGGTATCACTGTTCATCACACCACGGTCATGCGTTGGGTTCATCACTATGGCCCCATCTTTAAGGCTCTATGGCGTCGGCATCAAACAGCTCACGCTAAAAGTTGGCGAATCGATGAGACCTATATTCGAGTTAAAGGCCGTTGGGCCTATTTGTATCGCGCTATTGACAGTAACGGTTTGACCATGGATTTTGAGCTACGAAAACACCGCGAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCCC # Alternate repeat : GTTTTCCCCGCACATGCGGGGGTGATCCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCACATGCGGGGGTGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //