Array 1 292-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_CIKO01000158.1 Neisseria meningitidis strain NM2394, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 291 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 225 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 159 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 93 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CCCTTTCTCATTTCGCAGTGCTACAATCCTATGCCTGTTATTGTTTTCAGCCTTTT # Right flank : TATGATGCAGGCTGCTCCGTCATCGTCTGCAGTTGTAGCTCCCTTTCTCATTTCGCAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 953-1384 **** Predicted by CRISPRDetect 2.4 *** >NZ_CIKO01000025.1 Neisseria meningitidis strain NM2394, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 953 36 100.0 30 .................................... CCTCAACTTTGACCGTGTGCAATCCAGTTA 1019 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 1085 36 100.0 30 .................................... CAAACCAACCGGGTATTCATACACAGCCAA 1151 36 100.0 30 .................................... CACGGCAACCCACTAAATTTTGCAAATGCG 1217 36 100.0 30 .................................... CCCCGCCAATTATCATACATAAGATTTTGC 1283 36 100.0 30 .................................... CATAACAACCATTTTGTTATTTCGATTTTT 1349 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : ATTCCCAGCCGGAAATTAAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCATAACAACCATTTTGTTATTTCGATTTTTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCCCCGACATTGACGGAAAAACCCGAAAGCAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCCGCGTCTATGGTGTCCTTTGAGATGTCCAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCCGGGTAAAGGTTTCTGTTGCGACCCGAATGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTCGGCCGCTTTATTTCTGCCATATCGACG # Right flank : TCCTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA //