Array 1 61-690 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKAA01000008.1 Latilactobacillus sakei subsp. carnosus strain NBRC 107868 sequence08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 61 36 100.0 30 .................................... ACAAACCATTGTTAACCACTGCCGTTTTAG 127 36 100.0 30 .................................... TTTTATCATCCCAAATTAAACTATTCCATT 193 36 100.0 30 .................................... AAGGCCTATAAGTCTAGCGAACGCAACTAT 259 36 100.0 30 .................................... CAATTGTCGAATATGATAATAAACTGCACG 325 36 100.0 30 .................................... AAGAAGTTATTACAATCTGGGACAACGACA 391 36 100.0 30 .................................... AGAATACTATTTCACGCCTTAAAGGATTGG 457 36 100.0 30 .................................... TGAACAGTTTGATGGGTCAGTTAGGATGAT 523 36 100.0 30 .................................... TGTTCAGGATTAATCTCGCCGCCTTTCGCA 589 36 97.2 30 ..........................T......... ACGGTTCAAGAAGATTTTACAAAGTGGTTT 655 36 91.7 0 ...........................C.....G.T | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.9 30 GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC # Left flank : AAAGAGTATCAAATCAATGAGTAGTTCAACTTTAATATCTTTGTTAAAATCTCGATAATGG # Right flank : TCACGCTAATAATCGTAAATTCTTTTAATTTAAGTTTGGGGAGTACCTTTAAAGGGGTACTCTTTTTTATTAGATTTAATGCATATCCTTGATTGATATTTCACGATTCGACTATTGAAAAGCGTTCTCATTTAGCTTAGAATTAAGTCAGCAACAACGTGCTATAATGCGATTTTTGGAGGGTCAGTAATGTCTAAATTAGAAATTATCGATTTACACGTCGGAATTGACGGTAAAGAAATTTTAAAAGGTGTTAACTTAGAAATGAATACGGGTGAGATTCACGCCATCATGGGACCAAATGGGACCGGGAAATCAACCCTTTCAGAAACCATCATGGGTAATCCTAAATACGAAGTGCTTCAAGGTGAAATTAAATTAGACGGTCAAAATATTCTTGAAATGCCAGTTGATGAACGGGCGCGCGCTGGCTTGTTCTTAGCGATGCAATATCCATCTGAAATTCAAGGGGTTACAAACGCTGAATTTATGCGGGCTGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 44626-45388 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKAA01000017.1 Latilactobacillus sakei subsp. carnosus strain NBRC 107868 sequence17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 44626 37 100.0 29 ..................................... CAGCCAATGCGTCATAATCAGCTTGCGAG 44692 37 100.0 29 ..................................... ATCCAAGCGATAGTGTACTATTACTTATA 44758 37 100.0 29 ..................................... TGGCCAAGCATTGAAGCCGTTAAAAGCTA 44824 37 100.0 29 ..................................... GGGGTCTAATCCATCGTAAGCTTCTTTTA 44890 37 97.3 29 ....................................G TGCCAATAAGGATCTTGCACGCAAAAGGA 44956 37 100.0 29 ..................................... TACTTCGTTTGTAGACTATAATGAGCTTT 45022 37 100.0 29 ..................................... AACAATGGCATTTTTAACAACAGATTATA 45088 37 97.3 29 ............................A........ GAATACTACGGGTAACCGTTTAAAGACGT 45154 37 97.3 29 ............................A........ GTGCTTCAACCTTGTCCAGGCGGTGCTTA 45220 37 94.6 29 ............................A.......A ATCTAACGTTTGACTTGGCATTACAGTAA 45286 37 97.3 29 ............................A........ GGTGTTATCGGTGTAAGTCCAAATTGTCC 45352 37 94.6 0 ............................A.......A | ========== ====== ====== ====== ===================================== ============================= ================== 12 37 98.2 29 GTTTTAGAAGAGTATCAAATCAATGAGTGGTTCAACT # Left flank : GCGGTTGATTTAAATCATCTTTTTCAAAATAAGTTGATCAAAAAATTTACAGCCGATCTAACGGATGAACAACGACAAAAGGTAGTTAACCTGAATAATGAATTACGAGCCACTATTTTAGAAGCCGCGTTTATGTATGAATTAGCTTTAGATATTGACCATGAGTTAGATTTGCAAAAGTTAATTAAATTTTGCAATTTAAAATTTTCGAATGATGTTCAAGATGATCCATATGGTATAATAGAAAGCATAGTACAAACTGCTATAGAGTTACAAGAAACAAGAATTATCACGTTGATCAACGTTTCGCACTATCTTAGTATCAACCAGTTTAATGAACTGGTAAGACTAGTTGCGACATTGGATGTGAAACTCTTTATCATTGAATTTTCAGAATTGGCAACGCCTGACAGGTACCAAGAATGCTGTTATTATCACATTGATAATGATTATGTTGAATGGCGTTACGAATAAAGTGAGTATTTGATGAAAAAACATCG # Right flank : CGCGCAATAATAGACACACTTTCGCGCTAGTTTTAGAAGT # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTATCAAATCAATGAGTGGTTCAACT # Alternate repeat : GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAACT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //