Array 1 216500-215997 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QXFP01000003.1 Riemerella anatipestifer strain RCAD0416 Scaffold3, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                               	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	==============================================	==============================	==================
    216499	    46	  78.3	    30	A.AAACC..........GTT...T......................	GGCGTTGTATTATTCATTTCCATAATCTAG	T [216477]
    216422	    46	 100.0	    30	..............................................	TATTAACATTAACATTATTAACGGAATTTA	
    216346	    46	 100.0	    30	..............................................	GCATTTTGTGAATTTGTCAATATAAAGGTG	
    216270	    46	 100.0	    30	..............................................	AAACGCCCTGACCTGGATTATAATATTTGG	
    216194	    46	 100.0	    30	..............................................	TAAACTCTTCAATATCATTTTTGATAGCAG	
    216118	    46	 100.0	    30	..............................................	ATTTTGATTCAATATCAATATCACTTAATT	
    216042	    46	 100.0	     0	..............................................	|                             	
==========	======	======	======	==============================================	==============================	==================
         7	    46	  96.9	    30	GTTGTGAATTGCTTTCAAAATTACTATCTTTGTGATAGTTCGCAAC	                              	       

# Left flank :   TTATGGTGTAATTGCTTTCAACTTTTACTATCTTTGTGATAGTTCACAACTTAAATTTGCTTTTTATGAAGTTAGATTTTGATTTCAAAATCAGTTTCAGAAGAATCAAAAAAGGCTTTAAGTTTGTTGCGAAACTTAAAGCCGAGATAAAACAGAAGCTTTTCGGTCTGTTATTCTGAAACAAAGGGGGCTTTATCCTCCTTACTACTAAAAGCAAATTTAGAAATATTTTTTTCAAATGAAGGAGTTTATAAAATTAATTAAAAACATTTTTTCAAAAGAACCATTTGAGCAAGATATAACTGTTAGATTTAGTTTATCTTTAGCGCAAATAATATTTATTATTTTAGCTTTAGCAGGAGTAATATACATCTTCTTAAAATAATCTTATGAGTATAGAAGATATAAATACCTCTTGGACAAAGGAACAGATGAAAGAGTTAAACAAAAAGACCTATTACTAGGTAAAAGCTATTTAAACCATCTGTTTTCTAGTGATG
# Right flank :  CTCAAAAAATAAACCCGTTGTTTTTCAATGGGTTTTGCTTTTTATTAGGATTAGATTTTTCACTATTTCTTGTCTATTTTTACTTTAGTAAATCCTTTTTTTCTGTTTCTAAAAAAGTTCTAATTGCTGATAGGTTGGTTTGGGTTCTTCTTTAGCTCTCGCAAAGAAAATTTCTATATCTCCAAACTGTTTATCTGTAATACTCATGATAGCCACCTTACCGTGCTTGGGAAGTATTGATTTTACTCTTTTGATGTGTACTTCTGCATTTTCACGACTTGGACAATGCCTTATATAAATGGAAAATTGGAAAAGGCTAAAGCCATCGTCCTCCAAGCGTTTTCTAAAAAGTTGAGCTGCTTTCCGCATCGCTTTAGTTTCTGTTGGTAAATCATATAGCACCATAACCCACATAACTCTATAAGCATTAAAACGATTAAACTTCATAAAACTCAGGTACAACTATTTGTCTTTTTTCTCCGGTATAACATTTATAAACA

# Questionable array : NO	 Score: 6.11
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTGAATTGCTTTCAAAATTACTATCTTTGTGATAGTTCGCAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:67.39%AT]
# 	Reference repeat match prediction:         R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-5.40,-5.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-11] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,4.87   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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