Array 1 22860-24953 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBKM01000019.1 Neisseria meningitidis strain P3558 P3558_scaffold13.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 22860 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 22926 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 22992 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 23058 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 23124 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 23190 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 23268 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 23334 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 23400 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 23466 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 23532 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 23598 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 23664 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 23730 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 23796 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 23862 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 23928 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 23994 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 24060 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 24126 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 24192 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 24258 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 24324 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 24390 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 24456 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 24522 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 24588 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 24654 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 24720 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 24786 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 24852 36 100.0 30 .................................... TGGATAGGCGTTCCGCAGCATCAGCAAGCC 24918 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 32 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //