Array 1 26-852 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXW01000044.1 Streptococcus uberis strain OLC4459-A2 k127_1040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 .................................... TCTTTATAAATCAAGCGAGTAGAAAAACCA 92 36 100.0 30 .................................... CAAATCCTAATGCATCGTTTAAATATCTTT 158 36 100.0 30 .................................... ATCATTACTATCCCAAATTTGAAGCTCCCA 224 36 100.0 30 .................................... ACGATGTCGCAGTTATGTTCCGCACTCGCA 290 36 100.0 30 .................................... ATCTGTATAGATACTCGTATGGTTGCCCGT 356 36 100.0 30 .................................... AATTTATTAAATTAAGGAGAATATAAAACA 422 36 100.0 30 .................................... GTTTTCCATCTGACAATCCATCAAGTGTCG 488 36 100.0 30 .................................... ATGTCATCAAGCGGTTTTTCTTGAGTATGC 554 36 100.0 30 .................................... CCGAATTGATTAGAAGATACTCTAACTCAG 620 36 97.2 30 .A.................................. CGCCATTGAAGAATTAAAACCATTAGTTAG 686 36 100.0 30 .................................... AGTGTTTATACACGATGGACAGCGAGTAGA 752 36 97.2 30 .........................C.......... TGACAGCAACTGCTGCTGATGGATAGTTGA 818 35 91.7 0 ......A.........................C..- | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.9 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : TTCCAGACCCAATCAGTAATGGTTAG # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [25.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 594-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXW01000007.1 Streptococcus uberis strain OLC4459-A2 k127_106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 593 36 100.0 30 .................................... TTGCGATGTAGTTTATTGTTACTATGTCAT 527 36 100.0 31 .................................... TTGAGAAATCCTCTAATAAGGCGATTTCAAA 460 35 80.6 30 C....GA.....C..A....-....T.......... TCCGATATTTTATTTCTAATATTTGAATAA T [435] 394 36 94.4 30 ............G...................T... TGCATTAACAAAGTCACTTGATTGATTCTC 328 36 97.2 30 ............A....................... GTTAGTTCTACTTTAGTTTCGAAAAATCGT 262 36 100.0 30 .................................... ATTGGAAATCATCAAACAAGTTGTTATGCT 196 36 100.0 30 .................................... CCTTCACTAGTCCTATGTGAACATCTCCTC 130 36 86.1 30 .....T..TG.............T.C.......... TTTTCTTTTAATATCTTACTTGATTTACAT 64 36 86.1 0 .......T.....C.........G..T....G.... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 93.8 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : ATAC # Right flank : CAACTGTGTATTTTACCTAATTTATTTAT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 684-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXW01000029.1 Streptococcus uberis strain OLC4459-A2 k127_517, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 683 36 100.0 30 .................................... GAGCACAAAATAACTGGGATAGTAATGCAA 617 36 100.0 30 .................................... TTTGCGTCATCACCATTCCGAGAGATTTAA 551 36 100.0 30 .................................... AACAGGTATTGTTCTCTTATAAGTTATACA 485 36 100.0 30 .................................... TTGCGATGAAGGTTATTGGTACTATGTCAT 419 36 100.0 31 .................................... TTTAAAAACCCTATAATAAAGGGATTTCAAA 352 36 100.0 30 .................................... TCCTATTTTTTATTTCTAATATTTGCATTA 286 36 100.0 30 .................................... AATTGCTGAAGATTACCTTGACGAAATTGG 220 36 100.0 30 .................................... AAATATCGGATATCGCTGATATAATTACTT 154 36 100.0 30 .................................... TGACTCTTTAGATTACTACCTTAAGTATCG 88 36 91.7 0 .............TC.......C............. | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 99.2 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : AAACTTA # Right flank : CTAATGGTCGTGAATTGATGAATGCGTCTCAGTTTTAGAGCTATGTTATTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 514-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXW01000043.1 Streptococcus uberis strain OLC4459-A2 k127_956, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 513 33 91.7 30 ---................................. GATGGACACCGAAGAGCACCCAGAATATGC 450 36 100.0 30 .................................... AGGAATGATATGATCAATCGCTGGAGATAA 384 36 100.0 30 .................................... TGATAAAATTTTAAGCCCCGAGAATATCAC 318 36 100.0 30 .................................... AGCTGTTATGCTCTTGTCTGGTGCAGTCGT 252 36 100.0 30 .................................... TCAGCATTTGTTAAGTTAGTATAGCTTGAA 186 36 97.2 30 ...................................T CTTTACTCTTATATGTGATTTTGTTGTTGA 120 36 94.4 30 .....................T............T. GCCTTCTTTTCATAATAGATTGTGATGAAG 54 36 88.9 0 ......T................T......TT.... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 96.5 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : | # Right flank : CCCACCCGTTATAGTCGCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [13.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 154140-154373 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXW01000040.1 Streptococcus uberis strain OLC4459-A2 k127_907, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 154140 36 100.0 30 .................................... TACAGCTTATCCATTTAGCAAAACAAGAAG 154206 36 100.0 30 .................................... TAATAAATTTGGTTATGAATCTGTCGAAGG 154272 36 100.0 30 .................................... ATTATTATAATTAATTTTAGCTGAAACTTT 154338 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : AAAAGCCAGAAGTTAAATCTATGGTTGATAAACTTGCTGCAACAATTACAGAATTAATTTCTTTTGAATGTTTGGAAAATGAACTTGATTTAGAATATGATGAAATAACGGTGCTCGAATTAATAAAAGTATTGGGTGTCAAAGTTGAAACACAAAGTGATACAATTTTTGAAAAATGTCTTGAAATTTTACAGGTCTATAAATACTTAAACAAGAAAAAATTACTCGTTTTTATCAATACGGGTTCCTATTTGAGCGAAGAAGAAGTGGAACAATTGTTTGAGTACATTTCTTTGTCGAATCAATCTGTTTTATTTTTAGAACCACGGAAATTATATGATTTTCCGCAATATATTTTAGATAAAGATTTCTATCTTATGCCGCCAAAAGTGGTATAATAGTAGTAGAATATATCCCAATTAATGGAATCTTTCAAAATTGAAATCCTGCTAAGATGAGTAGCGCGATTACGAAACTTTTTGGAAAAATTCTTCCACGAG # Right flank : TGTCTTTGCTGTTTGGATCAGGAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 2-237 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXW01000015.1 Streptococcus uberis strain OLC4459-A2 k127_182, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2 36 100.0 30 .................................... ATCACACCGCTCTCACTCAAGTAAGCGACT 68 36 100.0 30 .................................... ATTTAATCATGTCGAAGGTTGTCATTTCAA 134 36 100.0 30 .................................... ATGGAAATAACCACTCAAACTAAGAAAAAA 200 36 86.1 0 ................G....AT....G..A..... | TT [234] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 96.5 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : AG # Right flank : CATAAAACAGCCACTTTCTAGAGTGCCTGTTTTTTCTTACTTTTCTTATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAGTCTACTGTTTAAAATGTATAATTATTAATAAAATGGTCTTGAAAATGTATATCAAAAAATGCGTTTTCAGGGTTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAGGATTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGGTGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCATCAATTGAAAGATAAAGCTTTTTATCCTGGTTTGATTGATTATATGATGAGTGGGCCA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //