Array 1 128488-127500 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUGP010000001.1 Pseudomonas aeruginosa strain LILL05 ctg_LILL05_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 128487 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 128427 28 100.0 32 ............................ ATCACCCGGCCATTGTACGTGCCCAGCGGAAT 128367 28 100.0 32 ............................ ATGCAGAACTCGAACGTCGTGTGCATCCGCGT 128307 28 100.0 32 ............................ TGTCTACCCAGCGTATTGGCCATTCCGTTGGC 128247 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 128187 28 100.0 32 ............................ TCGGCCCGTCCAGAACGTCACACGCTCGCCGT 128127 28 100.0 32 ............................ TCCAGGTAATCAGCGTACCACTGCATCATGAC 128067 28 100.0 32 ............................ ATTTCCACTTCTGCTGCGGCCTGGGCGGCGGT 128007 28 100.0 32 ............................ TCCACCGGGTTTTTGTCAGTCCATCCGGCCGC 127947 28 100.0 32 ............................ TTGACCAGATCGCGGCGTGGGGTGGTCGGCTT 127887 28 100.0 32 ............................ GCTGTGCGTCGCCGTGGTCTGACGGTCGAATC 127827 28 100.0 32 ............................ AGCAGATACCCGAACCACTGGAGGTACATGCA 127767 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 127707 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 127647 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 127587 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 127527 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8861-8413 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUGP010000023.1 Pseudomonas aeruginosa strain LILL05 ctg_LILL05_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8860 28 100.0 32 ............................ TGCTGAGTCAGCGAACCGCCGGCGAGGAGTGT 8800 28 100.0 32 ............................ TACATCGCCGCCGCGCTGCGCCTGGTCTGCTA 8740 28 100.0 32 ............................ ATGGTGTCGGTCCAACCCCACAGATAGCCCGT 8680 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 8620 28 100.0 32 ............................ AATCCAGGTGACGTCGTGCATCTGGGACTCGT 8560 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 8500 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 8440 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 133-1540 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUGP010000036.1 Pseudomonas aeruginosa strain LILL05 ctg_LILL05_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 133 28 100.0 32 ............................ GAGCGGCTGAAGAGTCGTACTGGCCAGAACAC 193 28 100.0 32 ............................ ATCGTCGCCGCCCTGCTGTGCCTGCTGATCTT 253 28 100.0 32 ............................ TTCTTCAGGATGTGCGTGCAGTCGAAAGCCAA 313 28 100.0 32 ............................ AAGGGCAGATCAGCCGAGGGGAGGGCGGAGAG 373 28 100.0 32 ............................ ATGGAATGCCGTCCGCAGACAAAGCCCTGGCC 433 28 100.0 32 ............................ AAGGTCGAGGCGCTGGCCGAGCCCAGGGTGAT 493 28 100.0 32 ............................ CCTCGGTCGGGCTGCGCCTAACGTAACGTCTG 553 28 100.0 32 ............................ TATCAGCTCAAGCAGGCCATGGACGAACTGGC 613 28 100.0 32 ............................ ATCCAGTGCGTCGTTCTGATAGGCGTGGATGA 673 28 100.0 32 ............................ TGAGTGGCTAGCGGAAGTCGACAGCAAAGAGT 733 28 100.0 32 ............................ GACAATCGAAACCGGCGCCACGGTCTGCCCGC 793 28 96.4 32 .......A.................... TGGGCGTCAAGGCCGTACTCGACTTCATTAAA 853 28 100.0 32 ............................ ACTGACGACCGTCACGCTGACCCGACCGGAGA 913 28 100.0 32 ............................ ATGTCCCGACCGTCGCAGGCCGTCAGCGCGTT 973 28 100.0 32 ............................ GCCCTGGGCCGCCTGGTCGAGCCGACCGATGT 1033 28 100.0 32 ............................ TCAGCGAGGTGACTGTCCGCCTCGGCTCGAAC 1093 28 100.0 32 ............................ AGTTCTTGCCGAAGCAAGAGGCCATGAACTCG 1153 28 100.0 32 ............................ AAGGTGTTGCAGCCCGGACAAGGCCAAGACTC 1213 28 100.0 32 ............................ TCGTCGACCGTCGCCTCGTAGTCGGCCTTCAC 1273 28 100.0 32 ............................ ATGCGACAACTGGCCGGCGCTATGCTGAACCA 1333 28 100.0 32 ............................ TCACGCTGCTGCGTGATCTCGTCGTCTTCGAA 1393 28 100.0 32 ............................ TGGCCGTAACCCGTGGTCAGGCTGAGCGGCAC 1453 28 100.0 32 ............................ AAGAGGAGCCTGAACATGGCCCAAATTTCTAA 1513 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGAGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //