Array 1 174241-174733 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVKP01000029.1 Clostridioides difficile F314 gcdF314.contig.28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 174241 29 96.6 38 ................T............ AAGAATGTCTAAAGAATTACCACCATCCTTCTCGATAT 174308 29 100.0 37 ............................. GACACAAAATCTTTATGTTGTAGGCGGTGGAGCATGT 174374 29 100.0 36 ............................. GGTCCAAATACTTTTGATTGCAGTGGGTTCACTCAA 174439 29 100.0 38 ............................. ATGTCAGTCACTAAAGTAAAATATTGTTGTTCTGCCAA 174506 29 100.0 38 ............................. AAAGAAATTATGACTAGCTTTAGCTTTGAAACATACGA 174573 29 100.0 37 ............................. GTAAAAAGAGAATGCAAATCCCAAGGCAAACTAAAAG 174639 29 100.0 37 ............................. GATAGAATCGGAGAATGGCTGTCTAATACATCAAAAA 174705 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 99.6 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTATTAACTTATGAAATATCTGTAAATGAGTAGATATTTCATAAGTTAATATTTATTGTTTGTATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAATTGTAGCAAGAATAATAATCTAAAGTGGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGGATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTGTACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTATTCGTGGTTCACTGCAAATTTGAGAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTAGG # Right flank : GACAGATCTAATATCAAAATAAGGTTATGACTTTTAAAAGCATAGCCATATCAATAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTTAACTCTCTTAAACCATTTTCATATCCTTTAGTAGATACTTTTGTTATTTTTTAATCTTTAGTAACTTATTCTTGAGTGAATCTCTTATTTTTTCTAAGCTATTTCAAGCTTCTCAAAAAATTCTATATTTATATTCATCACATATATAATACAATTAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAGTATATTTAATTCTTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 30299-30990 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVKP01000030.1 Clostridioides difficile F314 gcdF314.contig.29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 30299 29 100.0 37 ............................. CATCAATTTTCCTCCGCACGAAAAAATCAGAAGGGGA 30365 29 100.0 37 ............................. ACTGCAGATATCGAGTTATAACTTGAAGGAACATTTA 30431 29 100.0 38 ............................. CAGACATCAACACTAAAAGCAAACGGTTTATTTACAAC 30498 29 100.0 37 ............................. TGTATATCATTAATACTAGTATCCATTTTTTGTAATA 30564 29 100.0 37 ............................. TATAAAGAGCTTGGGGTAGCAAAAGGTGTTACATATG 30630 29 100.0 38 ............................. GAAAAAATAATTATTACTGTTTCATCAAATGCAACAAG 30697 29 100.0 36 ............................. ACTGATGTTTGAAATGTTATATCCTGCACAACTCCT 30762 29 100.0 37 ............................. TATTATCTATAATCTGAGAAGGTGTATAGTCTAAATT 30828 29 100.0 38 ............................. TTATTTATCTTGTACATATTCTTTAGTGCAACTGCTAC 30895 29 100.0 38 ............................. CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAC 30962 29 93.1 0 ........C..............A..... | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 99.4 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAACTATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCAATGTAGATAGATTACGTTTTTTCTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGATCGATATTTGTGATAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 17235-17524 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVKP01000032.1 Clostridioides difficile F314 gcdF314.contig.31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 17235 29 100.0 36 ............................. TGGTATTAGAAAGTTTGCTGATAGAATCTAGCATAC 17300 29 100.0 36 ............................. TATAGTTGTAACCGCTGATTTTAAGGAATTAAACCC 17365 29 96.6 37 ............................G CCAAGTTGAAAATTTAGAATCTATGTCTTTACACCAT 17431 29 89.7 37 .................CA.........G ATGGGAGCATTAACTTTAGCATTTGGAGCATTAGCAG 17497 28 86.2 0 ...............T....-.CT..... | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 94.5 37 GTATTATATTAACTAAGTGGTATGTAAAT # Left flank : GGAGGTACAAAGTCACTAGAAAACTTTCATCAAGAGTCCACAGATATTGAGGATTCTAAATCAAGTGATAATGTACAACAGGATGCCTAGTGAGATATTAAGAATTAAAGATGAATATACTTCTTTTTGTTTCGATGAAGCTTGTATGTTTTTAGTAGATGCTATAAAAAATGATAAAAAGCTTAAATTTGAAAATGATGAAAAGAAAACTATAGATAAAAATGAGAGAAAAACTTTTGTCCAAATAGCATTAGAGAAAAAGAAAAAAGTTAATAGGTAAAATATTCTAAATGAATAGAGTGAATTAATGTTAATTTATGATATAATGATAATATAGATATTTTGCAGTGTTCAATTTCTTATATACATTGGATGTAATCATTGAAAGTACTATGATATAAGCATATTTTGTGATATATCAAAAACACTACTGGTTACTCACTGCAATTTTAATATGGTTTTATATGTGTAAGGATTTAAAATGCTCAATTTATTTTGGG # Right flank : TTTTGAACAAATACAGAAAACACTTATTTAAATAGTAAGTGTTTTTGTTGTGCTTAAATTTAATCAGTTATGTGAAATTATTATGGAATAATATTACAAATAATTAATGAAAAAATTATTAATATATTATATAATTGAACTAGAAAATACATTTAATTTATAGTGAAGGAGAATGTTATGGCATTATTTGGGGATAAAGTTGATAAAGAAGATAAAAAGAAATTAAAAGAGCAAGAAGAAATACAAAAATTCATGAATAAGTATCAATTACAAGATTTAAATGAAAAAGATTTAACTATTTTAAGAAGAATAGCAGATGATTTATTTGCAACTGGACTTATAAAAACAGGATTAGCATTGAGTTTTACAAAAATAGAAGAACAAACTAAAATAAATTATCTTAGTGCTTTAGTTGAGCAAAACTGGATGATAATTAGACAATTATCTCAATTGAATAGCAATATAGAAAAACTTGTAGAAGATAAAAAATAATGGACTGA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 133611-134163 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVKP01000033.1 Clostridioides difficile F314 gcdF314.contig.32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 133611 29 100.0 35 ............................. CCTATTGGGTTTGCTTGGAAGTTTCCTTACAACTT 133675 29 100.0 36 ............................. AGAGAAATTTTATTCAAAAGTATAACTTCATCAGTA 133740 29 100.0 37 ............................. ACAGCTCCTAGACCACTTAATTGCGTTATTAATTCTT 133806 29 100.0 38 ............................. TCATGAAATAGGAGAACAGGATTACGATAACATGGACG 133873 29 100.0 36 ............................. TATCATAATCAACTTCAAAAAGAGCAGCTCTACCTT 133938 29 100.0 37 ............................. CTATTGTAGTTGTACCTTTACCTCTCATTTTTGCTTT 134004 29 96.6 37 .................A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 134070 29 82.8 36 .C.............CA..A...A..... TGCAATTTTTATTCGTTGTCCAATCGCTTGAAATTT 134135 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 97.3 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACACTTAAGTGACATTTAAGAAAAATATAATGCTTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAAAAGCTTTTTTATCCATATCGTTTAAAACAAGAAAATATCTATTCATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTCTACTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTATCTTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAAGAGATGTCCTTTAAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTGCACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAAATTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 251136-249129 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVKP01000043.1 Clostridioides difficile F314 gcdF314.contig.42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 251135 29 100.0 38 ............................. AAGTAGTGATGACTCATTTCTTGCTAAAGAAACTATAC 251068 29 100.0 37 ............................. CTATCTGAAGAATTTAACTTTGTTAAAAAACACCCTT 251002 29 100.0 36 ............................. GTTTTAGAAGAATCTAAATTATCAGATTTAGACAAC 250937 29 100.0 37 ............................. AGTTTAGAAGGAAACTTCTTTAAAGGTGTAGAGACTA 250871 29 100.0 37 ............................. CCTAGTTCTTTATTTGTTATTAAAAGTAATTGATTTT 250805 29 100.0 36 ............................. TATTTATACCTACTTAGTTTTAGCAGCTGACGCTTT 250740 29 100.0 39 ............................. ATTATTATCGTCCAACATCATATTTAAAAAATTTTGAAG 250672 29 100.0 40 ............................. TGGTAGGAATAAGCGTTAGTTTGGCGACTGGGTACTTATT 250603 29 100.0 37 ............................. AAAAAAGAAGATAGGGACATGTATAAAAAGACAGTAG 250537 29 100.0 38 ............................. GTCTTAATAAATCTTTTCTTATAGAGTTTTTTAAATTA 250470 29 100.0 37 ............................. ACAGGCAAAGAAGGATTTTCAACTTTAGGAACTGTAA 250404 29 100.0 37 ............................. TATAAATAAATAAACAAAAAACAAAAACAATTATTTT 250338 29 100.0 36 ............................. ATAATTAACAGCACAAAAAGTAGAAATCGGAAGTAA 250273 29 100.0 37 ............................. CAACCAAGCAGTCGCAGAGTTTTCTTTCATATTAAAA 250207 29 100.0 38 ............................. AAGTCACACAACCCCCAAGCATTTAAAATTAGTTTAAG 250140 29 100.0 36 ............................. GTATATGTAATTTTTATAACTGATGGAGATAATTTT 250075 29 100.0 36 ............................. CGAAAATGGACTGTTTTATCTTTAGGAGTAGGTGAA 250010 29 100.0 36 ............................. AAGTAGATAAAATAAGTTTAATAGGAATAAGCCAAG 249945 29 100.0 35 ............................. ATTGCAAGTTTATTGTCATTAAATACTTGTTTCGC 249881 29 100.0 37 ............................. AAAAAGGGTTGCACAAAAAATGGGTTGCAAGAGTTGG 249815 29 100.0 37 ............................. TTAATAGGCAAATCATAAGGAGGATTATTCTCTCCAA 249749 29 100.0 37 ............................. GAAGATATTTCTGTAAAAATCAATAAAAGATTAAAAG 249683 29 100.0 38 ............................. AGATATTGTTTAAATTCTCTGACTAGGAAAATTGATGG 249616 29 100.0 38 ............................. GAGGAATATCTTTAACAGTAATCAAATTTTTAACCCTA 249549 29 100.0 37 ............................. GCGATTAATTGGTCAATCTTAATATTTTGTTTCTCAT 249483 29 100.0 39 ............................. AAGACTGTCTTAAATAAAAAGAAAACAGAGCCACAACAG 249415 29 100.0 34 ............................. GTTCATCACTAGCAAAATCAGCTACTACTCTACC 249352 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGACACAGTGTCAG 249286 29 86.2 36 .........C............GA...G. AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 249221 29 79.3 35 ............TA...CA....A....A TTGTAGAATAAACAATAGCATATACTAAAACATCC 249157 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ======================================== ================== 31 29 98.1 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTATACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAACAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATAGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGTTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 152465-151913 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVKP01000036.1 Clostridioides difficile F314 gcdF314.contig.35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 152464 29 100.0 37 ............................. CAAAATGTCTAAAGAATTACCACCATCTTTTTCGATA 152398 29 100.0 37 ............................. TAGTCTTATTTTCAGCGCAGCCATTTACTACAAGTTT 152332 29 100.0 37 ............................. CGATATGCATCTGTATAAGTTTGATGTATTTCATCAA 152266 29 100.0 36 ............................. GTTGAATTTATGGATGATGCAATGGCAGCTCTTAGA 152201 29 100.0 36 ............................. AAAATAATTATATTCTTTTCTAACCTGTCAAGAAGC 152136 29 96.6 36 ...............A............. TTTTTTGAGGATGAAAAAGAGGAAACAAGAACAGCA 152071 29 96.6 37 ...............A............. GTTTATATGTTAAAAAGAAGTGTGGAAGAAGTCGAAA 152005 29 96.6 36 ...............A............. TCTTCTTTTGAGATAAACAGTAAAGTAATAGTAAAT 151940 28 75.9 0 AA......C...........AC.-....A | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 96.2 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : AGATTGCAGGTGAAAAGAAGAATTATCATGTAGTATATAAAATTGAGTAAATTCTATTGTATTAAATAATTTATTTTAGTTTAGTTTTGAGGGGGATTAATACAATGTGTGAGAATTTACTTGATATGGATAGAATAGAACTTATTAAAGAACTTGAAAGTATCTTTGAAAAGATGAAAAATGAAAATCCAGAAAGATTTTATAGATTTGTAAATTTAGTGAAAGAAGAAGGTAGGAAAAAAGAAAAGAAAGAGAATAAATAATATAAATAAAGCACTTGGATATTATGTTGTTTCAAGTGCTTTATATGTTAAAAAATGGTATAATATAGGTAAGAGTTTTGCAGTGAGCGATTTTTATGTTTAAGTATGGTTTAACAATTGGAATACAAGGTATTGAGAGTATACGATAAGTGTTATCAACTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTTTATGTGTGTAAGTATTGTAAATACTCAATTTATTTTGGG # Right flank : TTAAAAATATCAAAGAACACTTACTTAAATAGTAGGTGTTTTTTTAATTGAAAGGATGTGATGATAATGAAAAAAGTAATAAATAGGAAAAATATGTAAGAGTTATATGTTATAATATTCATGCAAGGAAAAAATGATTGAAAAAGTGTAAGAGTAGTTATTTCCATATTAAACGCCAAATTCCATAGTGGAAGGAGGTGGAGCGATATGGTAATAGATTTTTTATTAAGTGTACTAGCTGGTGTTGTATCAGCTTTTATGTATGAGAAAATAAAAAACTACTCAAACGCCAATAAGAGTAGTTTAAAAAAGTAATTAATTTTTAATCTGAATTGGAAATAACTGCTCTTGTATAAAGTAAATCATTATTTCCTTGCTTTTATTATAGCATAAATTAGAAAAAATATGCAAATAAATAAACAATGCTTATTAAATTTAATAGGCATTGTTTTTATTTTAATATTAAATAAGGAAGTGAATATATGATGAGAAAACTGCAG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 155081-154265 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVKP01000036.1 Clostridioides difficile F314 gcdF314.contig.35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 155080 29 79.3 36 GAG..........A.T............T GGAGTAAACATAAATACTTTTGGTCATGGTTACACA 155015 29 96.6 36 G............................ TTCATTGTTGGCACTATATGAGTACCATTTTTACTA 154950 29 100.0 37 ............................. ACTAAAACATATTTAGTACTACCTTTTTTCTTAACTC 154884 29 96.6 37 ...............T............. TCTTCAACTTCTTGTGCAACTTTTTTAGCTGCTTCTA 154818 29 96.6 37 ...............T............. GTTTTTATTGAAGTTTTTACTGTATTAGAATAAGCTA 154752 29 93.1 36 G..............T............. AAAAATACAATAAAAATATCTATAAATATGTTATTA 154687 29 89.7 37 G..............T............T TTAAATGATGCAGCAAAAGGTGCAAAAGACACAGCAG 154621 29 100.0 36 ............................. GCTGGAATTAATGCGACTACAGTAGAAGAAAAGAAA 154556 29 100.0 37 ............................. TTGTAAACATATAAGTTGCCTTGAATCATATAAGCAT 154490 29 100.0 37 ............................. GTCGCAACAAAAGCATGATAAGATTTGTTTCCACCAA 154424 29 86.2 37 ................A...C......GT CAGCATTCTAAGTGGGTGGTAAAACACCATATACCTC 154358 29 89.7 37 G............A.T............. TTTATAAATTTATCTATAAAGGTTCGAAATACCTTAC 154292 28 79.3 0 G..............T....-..TC...A | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 92.9 37 ATTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTCAGATGGCTGTTTGTGAAATCATTAAAAAGATAAAATTAGAAGAAAATGAAGTTAAGGAAATTTGGGAGACAAATGGTTCTTGGACTGGTACTGTAAATAAGTATACACAAAGTGTAATAGATAAGGTTAAGTGCTGGATAGATGATAATAATAAGCCTGCTAAGATACAGGGTGAAAAGAAGAATTATCATGTGGTTTATAAGATTGAGTAAATTCTATTGTATTAAATAATTTATTTTAGTTTAGTCTTGAGGGGGATTAATACAATGTATGAGAATTTACTTGATATGGATAGGATAGAACTTATTAAAGAACTTGGAAGTATCTTTGAAAAAATGAGAAATGAAAATCCAGAAAGATTTTATAGATTTGTAAATTTAGTGAAAGAAGAAGTTAGGAAATCAGAAGAGAAAGAGAATAAATAACATAGATAAAGCACTTGGATATTACATAGTTTCAAGTGCTTTGTTTGGTATAAAATGGTATAATAGAAGTAA # Right flank : TTAAATAAAGAAAAGGAAGCACTTACAAACATGTAGGTGCTTTTGTTTTGCTCAAAATTGGTCGGTTGAGTAAACTAATTAGAAAAAATTAGTAAAAACCTATTGAATTATTGGCAGACATCAATTATAATAATAAGTGTCAGCCAATAATCATACAGGAGGTGATTACTATAACTAAAAATAAGGTTGGCAGACCTAAAATGGAAACTGCTATGAATAAAAGAATTACAGTTAGATTGGATAGTAAGCATGAAGAAATTTTAGAAACATATACAAAAAAATATGGTATTACTAAAAATGAAGCTGTAAGAAAAGGTATTGAGAAGTTAGAAGAGAAGGAATAAAAAATAAGGGTCACTCTCCCCGACCAAAGATTGAGTAACCCCTATTGATGTATACTACAAATATACTAATGTTAGTATACATCATTCCTTAAAAAAATTCAAACTTAAGGAGTGTAATATTATGAAAAATTTAATAGTAAAAGAGTTCAATGGAAG # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : TTTTATATTAACTATGTGGTATGTAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.48%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 158075-157718 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVKP01000036.1 Clostridioides difficile F314 gcdF314.contig.35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 158074 29 96.6 37 A............................ CTTAAAGCTGTTGTAGATTTTGTAAGTAATGGATTTT 158008 29 100.0 37 ............................. GGTGCTTATATAAACTTTATCTCAGCTAAGAGGGCAA 157942 29 93.1 37 ...............T.......A..... ATTGCAATAACTGGGAAAGATATAGCAGAAGCATTAA 157876 29 100.0 36 ............................. ACTAGTGATTGTGTCTGAGCACCATTTAAAGTTTTA 157811 29 100.0 36 ............................. AAAAGAGCTGCAACAGCTATGAGAAAATATGGAATA 157746 29 89.7 0 A......................A....T | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 96.6 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : GAAGCTAAGAAAAAAGAGGAAATAGAGAAAAAATCCTCAGAGGAGAACAAAGGAAACATGGAAACGAAAAAACAAACATTAACTGGTGAAGAATTAAAGAAAAAAGTTGATTCTATAATTCCAGCAGAGTATAAAGGAAATTACTACACAAATGATGTACTAGATACAGATGGTAGCTATGTACTTAGTTTACAAGTTCAAAATGCAAGTTTTGACAACGAAAGTAGTTGTAAGGCATTTACTAAAGACTTGATTAACAAGTTAAAAGAATTCAGAATAGATTCAGCAGAAATTTATTTCGTGGGTTCAAGCGGTCAAACAACATATCAAATTAACATAGATGACTTTTTGAAAGTTCAAGATAATATTGATAGCATAGACGATATGGAGTTTTTCTCTTTTAAAGATTTTAAAAATTAGAAACAAAATAGAGACATTTGCTTAAATAGCATGTGTCTCTATTTTGTCAAATTATGTTATAATAGTACTTAAGAAATATA # Right flank : ACATTGTAGGTGGGTGGTGAAACACCACATACATTGTTTTATGTTTAAAATTAAATAGAAAAAGGAAGCACTTACTTTTTGGTATGTGCTTTTGTTTTGTCTTATATTGGAAATTTGTCTAAAGATAAATTATAATGATTATATAGATATTTATTAGGGGGATTATACTATGGGATTATTCAAAAAAAAGGAAAAAGAAAAAGGAATTTGTATGATTTGTGGTAATGAAGGAAATGCTTTAAAAACTGTAGATAATGAGTTTTTGTGTGATGAATGTTTTGAAAAATGTAGAGGCGAAATAGCTGTTCTTGGAAAAGGATTAAAAAAACTGACAAGTAAGGAAGTTATGAATGCTGTAGAGCTATGTAGAGATAGTTTTGGAAATTTTGTTAAAAACACATTAATACAAATTGTATATTTAGGAGGTCATCCTTTATTTAATAGAGAAGAGATGATTTGTCTCTTAATTAGAAGTGACAAGATAGTTGTTAAAGCTTTTG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 193394-192642 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVKP01000036.1 Clostridioides difficile F314 gcdF314.contig.35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 193393 29 100.0 37 ............................. CTTTCAGAAAAGGGCAATAAGGAATCTTTAAGTGTAG 193327 29 100.0 37 ............................. ACAAAAGAGTGGACTATAGATGTTGTAAACTTCTTAA 193261 29 100.0 37 ............................. AACATCCTTCCAACTCCGTCACTATTTGCAGCGTCAG 193195 29 100.0 37 ............................. ATGTTTGGCGACATTGTGGGAATAGTAGTTCTTTTTT 193129 29 100.0 37 ............................. GTTCGACTTGATTCAAATTAAGTTTAACTCTTTCTTC 193063 29 100.0 38 ............................. ATTTTTCAAACAGCTTTTGGAGCTGTATCTTCGATTGT 192996 29 100.0 36 ............................. ATACTTTCAGACTGAACTTCCTTATCGCCTTCTAGG 192931 29 100.0 37 ............................. TTTTTCAGTTCTGAATCAGTTGGAGATGCTGTTGCAA 192865 29 100.0 37 ............................. TTACTTGACTGGAAGCTTCTGACTCTTGTATATGTTT 192799 29 100.0 35 ............................. AAAGTACTGTTTGCTGATTCGGTAGCGTCTTCTGA 192735 29 100.0 36 ............................. ATTGCTGCTTCTGCCAATTCGGGCATAGTAGCAGGG 192670 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : AAGCACTGATTTTTATGTGGTTGTATTGTATGAGAGTTCTGGAATAGATTCATATTGGGTTTTTATAGATACTGATACATGGACTGTTCATGATATACAGCGTTTAAATCAAAATGAAGAATTAGTATCATATCATGATGTAAACCCAAATACAGAAGCAGATAAGCATTATAATAGAGATGTTGATGACGTTAATATTATATTTGTTCCATCAGAAAATAATCCTTTTGATAATGATGTAGATGGAATAAATTAAATATTTATTATAAGGAGTTAAACTATAAATTGATATAAATATTTAAAAATAATGTATTTATGATATAATAAAACTATGGAAATTTTGCAGTGAGCGATATTTATGATAAAATGGGGCTTAGCAGTTGAAATATAAGGTATTGAGGGTGTATGATAAGTGTTATCATTTGCACTACTGCCCGCTCACTGCAAATTTAAGAGAGTTGTATATGCGTAGGCATTGAAAATACTCAACTTATTTTGGG # Right flank : AATTTTTAAATAATAGAAATAGACTAGTATTTAGCTAGTCTATTTTTTTCTTTTCTTCTTTTTAATTCTTCCATTATAAATATAGCTGCTATAACTAAATAGTTAACTTCTAAACCAATTGCTAGGTCAACTATTGTAGTAACAGTTACATTTTTATAATTACCTTTTTCTAATTTAGATATATAACTTTTGTTATAATTAATTTTCTCTGCTAACTCTAATTGTGTTAAATGTCTCATTTTTCTCAGTTGTCTTAACATAAATTTAAATCACCTTTTAATATATTTTTTAGTAAATTCAGATAATTATATTATGTGCATTTTTGTGGGGAAAAGTTTCCTATTAGTCGATTTTTTTGTTGGAAATTTGTGCTAAAATATAAGTAAGAAATAACTCTAGCTAGATAGAGAAAAAATAGAAAATTGTAGATTTTGATAAGCCTTGCAATTAAATTTATATAAGTGTGAGAACTTTATTTCCAAAGATGGGAGGATGATTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 212489-211466 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVKP01000036.1 Clostridioides difficile F314 gcdF314.contig.35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 212488 29 100.0 37 ............................. ATGATAGAAGGTGAAACAGACCCGGATACCATATTGG 212422 29 100.0 37 ............................. TAAGCAAAAAAAGGAAGAACAATATCTCGAAAAAGTA 212356 29 100.0 37 ............................. TCATATTTTAAACTGTTGTCTTGTTTAATATATGGTA 212290 29 100.0 38 ............................. AAAAAATTTACTAATTCAGTATAATATTTATTATCTGA 212223 29 100.0 40 ............................. TAGATGATATTTCTCTATTTTCGTGTCTATATGATGCAAT 212154 29 100.0 36 ............................. CTGATAGAATTTATGACTTTGAAAGAGGCAAATTTG 212089 29 100.0 38 ............................. ATTGAAAAAACTGGCTTTCAGCTTGAAATTTTGTGAAC 212022 29 100.0 38 ............................. ACAGCTTCCTTGGTATTATCTGATATACTTTTTCCAAA 211955 29 100.0 37 ............................. TTGATTTCGTATTTACCTGCATTTGAAAAAGGATATT 211889 29 100.0 38 ............................. TCATTTGTATTCCAAAGATGTACAAGTCCAGCTACTAG 211822 29 100.0 37 ............................. TTATTAATTTTTCCGCTTCCGCTTGAAGTTTTGACTC 211756 29 100.0 37 ............................. TCTTTATCAATAGAGATTCCGTTATCTGAATTATATC 211690 29 100.0 35 ............................. ACGTGTAGAGTAGACAATACAGGTTTTTGGGTAGA 211626 29 100.0 36 ............................. TCTAGTTTTTTCTCTTTAGAAAAAATAAAAACAACT 211561 29 96.6 38 ............................T TAAAATTGTGTTTTCTCTTTCATACACCCACTTCATTA 211494 29 89.7 0 ...................T...A....T | ========== ====== ====== ====== ============================= ======================================== ================== 16 29 99.1 37 GTTTTATATTAACTATATGGAATGTAAAG # Left flank : CCTTGAGATTGTAAAGTAACAAAGTGAAAATGTAGAAAGAGAAAAAGAAATGGAAGGAAGAAAAGTATATAGATAAAGAGATATAACACGTATTTTGATTTAACTGTATAAGATGAAAAATTTGATGATTTTGAATAGTTTAAAAAATTGTTAATGAAAATAAAAGACTTGTTGAGCTAAAGTGCGATTACATAGGAAGGATGCAATAAAAAGAAAAAGGAATCATTGGAATAGAGAATATAATAAATACTTATAAGAATGTAGATGCTTTTAGTTTGTAAAATTATCCCATTTTTATTTTATAGTATGAGTTTTATGATATAATAAAAATATAAAAGTTTTGCAGTGAGCGATTTTTGTGATAAAGTAGGGTTTAATAGTTGAAATATAAAGCGTTGAGAGTGTATGATAACTGTTATCAATTGCACTATTGCTCGCTCACTGCAAGTTTAGGAGAATTGTATATGTATAAGTATTGGAAATACTTAATTTATTTTGGG # Right flank : GTTTTTTCTTATTAAATAAAGATTGAGTCACTTTATATTTAATAATACATATTCTAAATTGATTTTGTTTTTATATAAGAGAATTTGAATAATATGGAAAAAGATGATTAATAAATTATTAATTAGGGTATAAAATGATATAAATAGAATAAATAAGGGGTGGATGAAATGCTTGTATATAATAAAAGTTTTTATCCTAATGACATATTTCCAAGATTAGATTTTTCAAAAATAAAAAAACAGTTAAAATTGATAGATAATGACCTGTCAGATTTTGGAAGCATATGTATAATAGAAAAAGAACATTATACGATAAGTGTAAACAGTATAGGTGAAATAAATGTGTATTATGATTTAGAGTACGAAAATAAGGTGTATAGAATAGTTTATGAGATTGAAAAGTTATTTAAATCTCAAGTTGGAAGGTTTAGTATATCTACATACAGAAATTGATAATTAAAAAAGTAGAAATTAAAAAACTTAATACTAAAGATATAGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //