Array 1 281679-283369 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPAQ01000025.1 Campylobacter concisus strain AAUH-12CDsig 1100088, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 281679 37 97.3 35 .....................C............... AAAACAATTTTGAATTTTTGCATATTTTGCTCCTT 281751 37 97.3 36 .....................C............... ACTTTATGAATATTGTCTAGTATCCCAGTATTTATA 281824 37 97.3 38 .....................C............... GCTACCGAAATATTCGGTAGTACCAAATTTAGCCTTGG 281899 37 94.6 37 ......................TT............. AAGCTATTTGAATAGCTTCCATTTGACTTTGATTAAT 281973 37 100.0 37 ..................................... TAGCTCACTTGATTGAGCACTTAGCTTTTTAATTTGA 282047 37 100.0 40 ..................................... GAAGTCAAGAAATTTTTTATTGCTTCTTTACCTTCAGCCA 282124 37 97.3 41 .......................T............. TCGTGAACAATTACTGCAGATAAGTATTCAGGTTTATTAGG 282202 37 100.0 41 ..................................... ACTTAAGTAATAAGAAGCGCTTGACCACGAGCGGCTTTGAT 282280 37 97.3 37 ......................A.............. ACTAGTTCAGTTTTGTTCATAATGTATCCTTTTGGAT 282354 37 97.3 38 ......................A.............. TCATCAGTTTCTCCATCAGTCTCTGAGTACTGAATAGG 282429 37 94.6 34 ......................TT............. CCATCACAGCGTAAAAAGCCGTTTGGGATATTTG 282500 37 100.0 39 ..................................... AGTATTATTAAACTAGTTATTATTGTCGCATGTCCTATG 282576 37 100.0 38 ..................................... AGTTTTTCTTTTGTTTGTGAATTAAATTTTGGATTTGG 282651 37 97.3 35 .......................T............. TAAAGTAGGTCACACGCTAGTTGTGGGGCGGTCGT 282723 37 97.3 36 ...................A................. ATCAGCTTCCAGCCTAGATATATGCGGCAGTAAAAG 282796 37 100.0 39 ..................................... TCATCATACTGCATCTCTTGAGGCGCATATTGCGCTTGT 282872 37 94.6 35 ......................TT............. TAAGAGTAGGCTTTTAAATTTATGATAGCAGTCGC 282944 37 100.0 36 ..................................... AAGACATCTCCTGCTTTAATTTGAAGCATAGGTAGT 283017 36 91.9 42 ..................T...-T............. TTTTTCTCCTCAAACATAACACGCTCCTTGTGCTCGCCCGTT 283095 36 91.9 39 ......................TT........-.... TTTATGTAGTGCGTTTTCGGGGCTGTTAAACTCTAGGCT 283170 37 94.6 39 ...................AT................ TTATGAGTCTCATCCATGAGAAATACGTCAAAAAATATA 283246 37 97.3 39 .............................G....... CCATTAGCTCATCATAATCATAAAACTCTGGACTATTTA AAAAAAAGGGG [283271] 283333 37 91.9 0 ......................TT............T | ========== ====== ====== ====== ===================================== ========================================== ================== 23 37 96.9 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGGCGCAAGAGCTCTTTGTCTAACTTATGTAGTTCTTAATTTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTGGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATACCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGCTTTTCACGAATTTTAGGTATCTTTAAAGCCAGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : TTTACATTTATATGTAAAATTAAACTACTTTATCTACAAACACTACCATCAACTTTTTCATACTTTTATTTTTTTTGGAAACGCTTTGTCCATATCTATTTTTATAATTGCTGCATATTTACAAAAAAGAGAAACTAATAAAATATAAGAAGAGGAGATATTAATGAAATATAAAGTTGAAAGATACAAACTCATCTGCAAAAACTGCGGAGAGATATACTACTTTGACTACGAAGGATCAGATGTGTTAGGTAGGGACTACTTCGACCAAATAGTAACAGAGTGCTCTAAATGTGGCTCAAGAGTTTTAGAGAAGCGTGATTTAAATTTCATTGACACAGCGAAGATGAAATTTAAAAAGATGTTAAAACCAAAAAACAGCTACTTTACAAGGTGATAAGATGTTACCACTAATAGCAATTTTTACAAGTAGAGCGATAGTAGATATCCTACAAATAGGCGTAATAACTTTTTCAATCACTGTTTCAGCAGCCAAGACC # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 290066-290409 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPAQ01000025.1 Campylobacter concisus strain AAUH-12CDsig 1100088, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 290066 37 100.0 40 ..................................... ACAGCAAATAATGTTTGCTCAAATTGTGTAAATCTGTCGT 290143 37 97.3 40 ....................C................ AATTTTTCACTTTGAGTTCTATGTTTCCATGTAAACTCAC 290220 37 97.3 38 .......................T............. ATTAGCACGACTACCGCCATATTGTATGGTCTTGTTTC 290295 37 100.0 42 ..................................... ATGTTTGTCATATTTGGGTTATCCCACTGGTCGCACTTACGT 290374 36 89.2 0 .............................GC.-...T | ========== ====== ====== ====== ===================================== ========================================== ================== 5 37 96.8 40 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : TTTATAGACTATGTCGTAAACCAGCCATCTTTGAGAAGCAAGAGCTCTTTGTCTAGCTTATGTCGTTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGGCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAATCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGCTTTTCACGAATTTTAGGTATCTTTAAAGCCAGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : TTCCATAATCCATATATAAATTTAGGCCATTTCACATACATAAAAAGTTGTATTTTATTTTTGAGACGTATTATGATAATAGTGCCATCTATCAAAAGAAACACCAATCTACAAGCAAGAATTGTAAAGTCAAAAAAGATCTATATAAGAAAGCAAAAGCATTCAAATTGTCCTAAGCTCAAATAGTCTATTACCAAGAAACACTATGATGCCTACTCAAATGTGGTCCAGTATCTCTATCCGTTTCAAGTGTTTTAAGTGGATTAGCCAAAATAGTATCTAGCAAAGATAGAGTCTAGTCGTCAGCACTTTTTATCGTAAAAAGTATTTTTCGCAATTATTTTTTACACCAGTGATATTATCATTTATAATAACTTTTGAGCAGAAATATTTTAATGTGAGCTTGGCATTTTTAAAAAGGTAGTTTTTATCTTAATATTTAACGTCTAAAAATAGGTGCCATATTGGGTGCCATCTACTTAAGCATTATTAGCAATTTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //