Array 1 821-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYMT01000281.1 Salmonella enterica strain BCW_4953 NODE_281_length_855_cov_0.473958, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 820 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 759 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 698 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 637 29 100.0 32 ............................. CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC 576 29 100.0 32 ............................. GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG 515 29 100.0 32 ............................. AATTCCTCGATAACGATCTGCACCAGGTTGAA 454 29 100.0 32 ............................. CCGTATCGGGTGTTTAATTTTTACGTGAGAGA 393 29 100.0 32 ............................. AGCGATACAATTCAGGAGTTCCAATTCTCTGT 332 29 100.0 32 ............................. TTAACGTAACAGTGTATTTTTTGTCCCCGTTG 271 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 210 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 149 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 88 29 100.0 32 ............................. GCAAAAGGATCGAACAAAAAACCTGTGGTCAT 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGACCAAAGCTCGATATCAGTCAATTATGGCCA # Right flank : C # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7-769 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYMT01000308.1 Salmonella enterica strain BCW_4953 NODE_308_length_807_cov_0.663889, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7 29 100.0 32 ............................. CCGTTACCGTTGTTCACGTCCGGTTCGCTAAT 68 29 100.0 32 ............................. TCTGTACACGACGTAACGACCACATCATTCAG 129 29 100.0 32 ............................. GCGACGAGCGCAACGCAGGTTACTGGCGTTGA 190 29 96.6 32 ............................T GCGGAGCAGGCTAGCGAACCACTCCAGGGCGA 251 29 100.0 32 ............................. TTTTCGCTCGCGCTCGTCCATCATTCCGCGCC 312 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTTGTCTGCGC 373 29 100.0 32 ............................. GGGCAGAATTAACGGACGAACAGCGGCAGACA 434 29 100.0 33 ............................. ACCGTTAAATCCTGGTCTACTACCCCGCCCACC 496 29 100.0 32 ............................. GGAGCGGGACGACAGCGAACCATCCGGAAAAA 557 29 96.6 32 ..........A.................. CCAGACGACCTTCGGTGTCTTTAATCAGTTTC 618 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 679 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 740 29 96.6 0 ............T................ | A [767] ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTCATG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 108811-107947 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYMT01000001.1 Salmonella enterica strain BCW_4953 NODE_1_length_448415_cov_5.40709, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108810 29 100.0 32 ............................. TCACTTTTTGCACACTCAGTGACGACATTGTA 108749 29 100.0 32 ............................. GCAAAAGTCATGGCGTCATTCGGTGCTGATAT 108688 29 100.0 32 ............................. TTTATCGCTCTGGGAGTGGTTATAGCTACTAT 108627 29 100.0 32 ............................. GACAAAGGAGATATCCGGTTAGCGCTTTCACA 108566 29 100.0 32 ............................. CCTGGCGGCACACTCTACCGCCCGTGGTGACA 108505 29 100.0 32 ............................. GCATCGCCTGGCTGAGTCCGTCGCTAACTGCG 108444 28 96.6 32 ..........-.................. ACATCTGGGAGGCGTGGCTAAAACTTACAGCT 108384 29 100.0 32 ............................. GGCGCGCGTGTTGTTGGTGATTCCGCATATCT 108323 29 100.0 32 ............................. CGGGCGCATTGTACGCGATGCAGACCATGCCG 108262 29 100.0 32 ............................. CAGACCGATCCGCGATCATTTTCTGTGGCTGT 108201 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 108098 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 108037 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 107976 29 93.1 0 A...........T................ | A [107949] ========== ====== ====== ====== ============================= ========================================================================== ================== 14 29 99.3 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGGTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125718-125080 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYMT01000001.1 Salmonella enterica strain BCW_4953 NODE_1_length_448415_cov_5.40709, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125717 29 100.0 32 ............................. CCAGAACGATGACGTTGAAGTACCGAAAAATA 125656 29 100.0 32 ............................. TTAATTTTCCCCTGTGGTCGAAACCGTCACAC 125595 29 100.0 32 ............................. CTTTGCGGAGAATACCGATCCGGTGGCTAACC 125534 29 100.0 32 ............................. GCAGGAGAATCGCATCATCGACAACATGGTGA 125473 29 100.0 32 ............................. CCGTGCATTTTTAGCAGATGAGTACCCAACAT 125412 29 100.0 32 ............................. ACGATTATTTGACGCCAGAAGCAGCAGATGCA 125351 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 125290 29 100.0 32 ............................. CGATTCAGATTCGCCATTGTTAATTTTCCCCT 125229 29 96.6 32 .....T....................... CCGTTTCGGCGCAGCCGCTTATTCTTCACTGT 125168 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 125107 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAACTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTGTCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACTGTCGAGTCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //