Array 1 31282-28657 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMQV01000059.1 Mycobacterium helveticum strain 17-773 NODE_59_length_31409_cov_87.415135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 31281 36 100.0 36 .................................... ACGGCTGTGCACCTGCATTCGCAGCGCGTCCAGCTA 31209 36 100.0 35 .................................... ATCCACACCTCGGCGTCGCCACCAGTCAGCAGTGG 31138 36 100.0 35 .................................... CTCCAACTGGCTCACCGGGGGTGAGTACATAGTGG 31067 36 100.0 35 .................................... GAGCTGTACACGTTGCGGCCGCGTTCCCACCACGC 30996 36 100.0 34 .................................... TCGGTGTAGAGGAGACCGCGGTTGACGATCGAAG 30926 36 100.0 35 .................................... TCGACAGACGCCCTCTTTGACATGATTGCGCGGGT 30855 36 100.0 35 .................................... TCGATCCATTCTTGCGCCCAGGCGGTTATGCGGTC 30784 36 100.0 37 .................................... AAGGTCAGGCGCCGGCATCGATCACAGCGCCCGGTAG 30711 36 100.0 37 .................................... CGCATGGCTAAGGCTGCGCGCGGCCAGGAAACCGAAA 30638 36 100.0 36 .................................... ACGCCGCCGTCGTGGGCGACGAGCACCGACATTGCC 30566 36 100.0 37 .................................... ATCGAGCCGCTGCGCGATGCTGACTCGGCGTGCTGGA 30493 36 100.0 35 .................................... CGGGGACACCGGGACGCCCCCAAGTGCGGCGATGG 30422 36 100.0 35 .................................... TCGAAGTCGGGCGGGAGATCCCAGCGGCGCTGCGG 30351 36 100.0 36 .................................... GTGACGGCAATCCGCCTGGCCGGGGGCATCGCCGGA 30279 36 100.0 38 .................................... ACGACGAACTCGTTCACGTTCACGCTGACCTACCAGCG 30205 36 100.0 36 .................................... CGAGCTTCCGCTTGGTCGTGATCCCCTCGGCCACGC 30133 36 100.0 36 .................................... CGGAATAGATTTTACTGTTCTCTACTCGGTCATCCG 30061 36 100.0 37 .................................... CGCTTCTTCACGGCGCGGTAGGCGTCGAGGTCGGCGT 29988 36 100.0 38 .................................... TTCACGGGGCTGCTTGAGCCGCTGGAAATGGTGCTGCT 29914 36 100.0 37 .................................... TTCGCAGACGGCAGACGGGTGCTGTTCTTCGACCCAG 29841 36 100.0 35 .................................... TCCGATTCCGTTCGTTGTCAAGCCTGTCCGCAGAA 29770 36 100.0 36 .................................... CCAGGATCGGACCCATGCTGACGCGGTAGTAGTGGG 29698 36 100.0 34 .................................... CCGGCCCTCCCATCCAATAGTCGCCGATGGTGGG 29628 36 100.0 34 .................................... TTCAGCTTCCTTGCTTTTGGGGAGCCGCGCTCCT 29558 36 100.0 37 .................................... GTCAAGTTCGACACCACCGAAATGTTGCGACTGGACG 29485 36 100.0 37 .................................... GTTCAGCAAGGCTTGGATGATCGCGGGAGTGGGTCGT 29412 36 100.0 38 .................................... GCCAGCCTGACCAAAGTTTGGAACTGAGCAACTTCCCA 29338 36 100.0 37 .................................... CGTTCATATGCGCCGCCAGTCACCGGCACATACGGTC 29265 36 100.0 36 .................................... CTGTCCCCGGAAAACAGTGTGCTGGTGCTGGATTTG 29193 36 100.0 34 .................................... TTGGGGGGGTCGACGCGCTCGGCGACGTTGATGG 29123 36 100.0 37 .................................... GGGCGCCACATCCGCGAGTGGCACCGGCATGACTACA 29050 36 100.0 34 .................................... ACGCAATTGGGCTGGCCGGTCTTCCCGCTCCGGC 28980 36 100.0 35 .................................... ACGACCACGTCGGCGCCGCTGGCGGCGTCGAAGGC 28909 36 100.0 35 .................................... ACCAACCTCGTGGCGAAAGCCGTTGGCTTCCTCTA 28838 36 100.0 37 .................................... AACGGACACGCTCGTTACGGGCCCCGACCAGTCGGCG 28765 36 100.0 34 .................................... CTGGACTCATCCCATCCCCGGAACCTGTCCCCGC 28695 36 97.2 0 .....C.............................. | A,CC [28673,28676] ========== ====== ====== ====== ==================================== ====================================== ================== 37 36 99.9 36 GTCGCGGCCGTTTCGGCGGCCGCACTTCATCGAGGG # Left flank : CCATGCCTGTCGAGGATCACCGTTTCGCGGGCATTCTTACGTGATGCACCGAGGGCGTTTCGCGGGCACTTCCCGTGTTGCTTGCCGGAGGGTTGCAGGAATGGTGGTGGGCGCGTGATTCTGGCTA # Right flank : ATTCGGACCCCAAGCGTGCTCGGTCAAGCCGATGCTGAACAGGGCCCAGCCTGGCGGAGCCGCGGTCGTCGGAGGGCATGCTCGTAGCGCTCCAAAACCAGCAGCCAACCGCAACGAACACACCCATCCTCACCAACGCACCTCGGCGGTCCGAGGCTGGGCTCACTGGACATCCGTGGTGACAAGTGGAACGCCGATAGCCCTGTCTAGTCGAATTCCGGTTTCTCGGTACGGGTCCGCTTGAGTTCGAAGAAGTACGGGTAGGACGCGAAGGTCACCGAGGCGTCCCACAGCCTGCCCGCCTCCTCGCCCCGAGGAATCTTCGAGAGCACCGGCCCGAAGAACGCCACACCGTTGACGTGGATGGTCGGCGTGCCGACGTCGTCGCCGACCGCGTCCATCCCGGCGTGGTGGCTCTTGCGCAGGGCGTCGTCGTAGGCGTCGCTGTCCGCGGCCTCGGCGAGCCCGGCCGGCAGGCCCGCGTCGGCGAGCGACGCCTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGGCCGTTTCGGCGGCCGCACTTCATCGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 7813-8640 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMQV01000160.1 Mycobacterium helveticum strain 17-773 NODE_160_length_8717_cov_107.298843, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 7813 36 100.0 35 .................................... TCGTACCGGTCGACGCGGACCCTTCCTGCTCCTTC 7884 36 100.0 36 .................................... TTGACCCCGTACATGGGACTGATACCGATCGCCACG 7956 36 100.0 36 .................................... CTGGGAGGGTCGACGCGCTCGGCGACGTTGACGGTG 8028 36 100.0 36 .................................... GTGGGGACGGCGCTGCTGCCGAACCCTCCGGTGACG 8100 36 100.0 35 .................................... CGCACTGCTGGTGGTGGCCGCTGGGTGCTGCACTG 8171 36 100.0 35 .................................... ATCCTCGAAATCCACGCCATCGGCCAATGCCACCG 8242 36 100.0 34 .................................... GGCGAGTCGGTCGCGCTCTACAAGACCGAGCCGG 8312 36 100.0 37 .................................... CTCCCCGACGCAGTCACGCCGCTGGTGGAGATCTCCC 8385 36 100.0 38 .................................... GCCCGCAAAAAGGACGACGACGATTTTCCGTCGTTTGA 8459 36 100.0 37 .................................... GGCTGCGCATTGTCCGGCGCCAACACCATTGCAGCAG 8532 36 100.0 37 .................................... AGCGCCATAACCGGATACGTGCCGGATGATCCCTCCA 8605 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 12 36 100.0 36 GTCGCGGCCGTTTCGGCGGCCGCACTTCATCGAGGG # Left flank : GCGTAACGACGCGATGACCCGAAACGACGCGCGCCGGTTCTTGATCGCCTACGACATTCCTGAGGATCGTCGACGCGACCGGCTCGCAAAATGCCTTGAGCGGCACGGTGACCGCGTGCAGTACAGCGTCTTCGTCATCGACGCAAGCCCGGCACGCTTAGCGCGTCTGAAGAACGAAGTGTCCACGATCATCGTCCCATCCGAGGATTCCGTGCTGATCTGTGATCTGGGGCTCGTCCGGAGTATGGATAAGGAGCGGTACGCCTTCATCGGACGATCCCGGCCGATCATGAACAATGGCGCAATTGTCATCTGAACCGCTGCGCGAGACCCCGGTCACGACAAGAATCCCGGGGAGCGCTCGCGTGCGATCCTCCCTGTTCAGGCACTGTGCGGTGCTCGTCCGGACATCTAGCCGTAGGTAGCTCGTGGCTGGCATGTGGAGGATCTCGCGGACCTGCCACCAACCCGCTGGTCAAAGGCATAGAATTAGTTCGCCT # Right flank : CGTAATGCATCACGTCAAGATGCCCGCGAAAGTTGATCCATGCATCACGTAAGGAATGCCCGCGAAACCGGGGTCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGGCCGTTTCGGCGGCCGCACTTCATCGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //