Array 1 384320-383682 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTE010000001.1 Streptomyces olivaceus strain CGMCC 4.1369 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 384319 28 100.0 33 ............................ ACAGGTCGCGGGCATGGAGGTGGGCGTCGAGGG 384258 28 100.0 33 ............................ GTCCTCGTCCGGCAGGTGCACGCGCTCGGCGTC 384197 28 100.0 33 ............................ CGCGAACCCACGGCACGGCGGCAACACTCGAAG 384136 28 100.0 33 ............................ CACGGTCAGGCCCTGCTCGGTCCGCGTCTCACG 384075 28 100.0 33 ............................ GGTCATCGAGCGCACCCCCTTCGCTCTTGGCCG 384014 28 100.0 33 ............................ CCCTTGTGCGCCCCCGTGAGTCTGACCAAAAGG 383953 28 96.4 33 ..........T................. GTACGAGGAGGCGCTGGCGACCTCCGGCGCCGG 383892 28 100.0 33 ............................ CTTGCCGCGGTCGTAGCCGGTGCGGTCCTCGTC 383831 28 96.4 33 ...................A........ GCCATCGGCGTGGAGGAGGCCGGCCGTCGGCTG 383770 28 100.0 33 ............................ AGGACCCAGCCGTCCGCCTCGCTGATCGCCGCC 383709 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.3 33 GTCGTCCCCGCACCCGCGGGGGTAGTTC # Left flank : GGGGACGACGACCGGAAGCCCTCATCCAACCTCGTCATGAGCGAACTACCCCCGCAGGCGCGGGGACGACGTGCCGGACGCGACGCCGGCCGCAACGCCCGCCGAACTACCCCCGCAGGCGCGGGGACGACGACCGGCCCGGCCAGTACCGGGCCACGTCCCAGAACTACCCCCGCAGGCCCGGGGACGACACGGACGATGGCCCGACGGTAGGTGAGGCTGGTGAACTACCCCCGCAGGCACGGGGACGACTGGACGCTCAGCCTCGCCAGCGACGCCCGCGGCGAACTACCCCCGCAGGCGCGGGGACGACCCGGCGGCGTGGCCGTGAACGTCGTTGACCTGCGAACTACCCCCGCAGGCGCGGGGACGACGGTTGGTCTTCTTGGGCATGTGAGTCCTCTCGGGAACTACCCCCGCAGGCGCGGGGACGACTCCGCTGTGGCACGGAGCGCGGTCATCATCGTGGAACTACCCCCGCAGGCGCGGGGACGACTGAT # Right flank : GACCGTGGCTTTATTCACGAGTAGTGACGCCGGTTGTTCCTAGATTTGGGAGGCACCTAGATCTACGGAGGGGTGTTGTTCACGAGTTTCGACAGCACCGGGGGACTTGCCAGAGCGGCATCGAGGTGCTCCTGGTGAAAGGCCTTGTCATGCCGCAGACGTCGAAGGTCGAGCTGTACGCGATCCGGCGTGACCATCGTGCCGGCACACCAGTCTGTCTGTCCGACCGGATGATCGAACCCTTCGGCGTGCAGCTTGTTGAGAGCCGAGTTGTCGACGTCGCCCCGCCACTCATACGTGATTGTCGTGATTCAAACCTAGCTATCGGGTCAGCGTCTCGAAGCCGGCATCGTCGCAGTACTGCACAACGCGCCTCTCCGCCTCGGAGTCACTGTTGTTCATCGCTGCCACCGTCGCCTCCGCCAAGGTGCGGCCTCCGCCAACGGCCTCATCCCGGAGCGGTCGCACCGCGAGGAAGGCGTCCTGCGCGACGGCCCCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 384324-384961 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTE010000001.1 Streptomyces olivaceus strain CGMCC 4.1369 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 384324 29 96.6 32 ............................C ACGATGATGACCGCGCTCCGTGCCACAGCGGA 384385 29 96.6 32 ............................C CGAGAGGACTCACATGCCCAAGAAGACCAACC 384446 29 100.0 32 ............................. CAGGTCAACGACGTTCACGGCCACGCCGCCGG 384507 29 100.0 32 ............................. CCGCGGGCGTCGCTGGCGAGGCTGAGCGTCCA 384568 29 93.1 32 ..........T.................A CCAGCCTCACCTACCGTCGGGCCATCGTCCGT 384629 29 93.1 31 ..........G.................T GGGACGTGGCCCGGTACTGGCCGGGCCGGTC 384689 29 100.0 32 ............................. GCGGGCGTTGCGGCCGGCGTCGCGTCCGGCAC 384750 29 100.0 32 ............................. CTCATGACGAGGTTGGATGAGGGCTTCCGGTC 384811 29 89.7 32 .......................T.C..C CGCCAGGACGTGTCGCCGCTGTAGGCGGTGCA 384872 29 86.2 32 .............T.A..T......C... GAGCTGCGCGGCCGGTGCCCCGTACGCCGCGC 384933 29 72.4 0 ....C..A.............ACG.CC.C | ========== ====== ====== ====== ============================= ================================ ================== 11 29 93.4 32 GTCGTCCCCGCGCCTGCGGGGGTAGTTCG # Left flank : GGGACGACGACGAGGACCGCACCGGCTACGACCGCGGCAAGGAACTACCCCCGCGGGTGCGGGGACGACCCGGCGCCGGAGGTCGCCAGCGCCTCCTCGTACGAACTACCCCCGCGGGTACGGGGACGACCCTTTTGGTCAGACTCACGGGGGCGCACAAGGGGAACTACCCCCGCGGGTGCGGGGACGACCGGCCAAGAGCGAAGGGGGTGCGCTCGATGACCGAACTACCCCCGCGGGTGCGGGGACGACCGTGAGACGCGGACCGAGCAGGGCCTGACCGTGGAACTACCCCCGCGGGTGCGGGGACGACCTTCGAGTGTTGCCGCCGTGCCGTGGGTTCGCGGAACTACCCCCGCGGGTGCGGGGACGACGACGCCGAGCGCGTGCACCTGCCGGACGAGGACGAACTACCCCCGCGGGTGCGGGGACGACCCCTCGACGCCCACCTCCATGCCCGCGACCTGTGAACTACCCCCGCGGGTGCGGGGACGACATCA # Right flank : CTTGCAGAGCTTTGTGTGGACGGTGGAAGCGAGGCGGTCGTCTTCTCCAGGCGGATCGGAAACCGCGGAGCGCCGCCGTGGCCGTCATGATGACGATATAGGGGTCGGTTCGGTGGGAAGCCAACGTCAAGGCGGCGAGGCGGGCACAGCGCGAGCGCCAGCGGTGTCCACGAGACTGGCCATGTGCTCGCCGATCGCCGCCGTCCGCGTCACCTCATCAATCGCACTGGACTAGCGTCCACCGTCATGTCGTCCCCAAGCGCTCAGCTGCGTCTGACGGGCCCACGGGCCACGTCGGCGGGCTTGTCGAAGCCTCAGCCTTGGGCGTTGCCCCTGCGAGGCGGCAGTTTCCGGTCGTGAGGGGCTCTCTTCTCATCGAACCTCTGTGCCTTGTAGGTTCGCGTGTGCGCAATGAGTTGTAGCTGATGCGCACGGGCTGACGGGGGATGAGCGATGGTGGGGCACCGGCCGACGGATTGGCATGTCCTGGACCTGGACAA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGGTAGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 401963-402479 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTE010000001.1 Streptomyces olivaceus strain CGMCC 4.1369 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 401963 29 96.6 32 ............................G ACCGACACCGAGCCCGGCAGCGGCGACGGCAT 402024 29 100.0 32 ............................. GGAGCGTCGACGTGGACGAGCGTAGAGACCCC 402085 29 100.0 32 ............................. GTGAGGCCGCCCATGACGAGGCCGATGATGGC 402146 29 100.0 32 ............................. ACCCCACAGTCCCCGTACTGCTCGGTGGTCGT 402207 29 100.0 32 ............................. CTCATGGTGGCCCCTCGCGGATCGGGGCCGTC 402268 28 96.6 32 .....................-....... ACGAACCCGGCGACGTCGATCCCCGCCATCGG 402328 29 100.0 32 ............................. ACCCCACAGTCCCCGTACTGCTCGGTGGTCGT 402389 29 100.0 32 ............................. GGGTCCGTGACCATCGCGGAGAACGGCGTCAG 402450 29 89.7 0 .............T..........AC... | C [402472] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ACACATGTTCACCCGACGACCGCGACCGGGCCGAGTGGCAGCCCGGCAACCCCGCCTGGGGCCACTGCGACATCACGGCGTTGATCGTCAACGACATCTTCGGCGGCGATCGCGTGGTCGGCGAGGTGTACCTCAACGGTGCTCAGCGCAACTTCCACTGGTGGAACCGGCTGCCCAATGGCATCGAGCTCGACCTGACGCGCGAACAGTTCCGCCTCGGACAAACCGTCACGGCCGCCCGTGTCGTCGAACGCCCGCCCGGCCCGCTGCCCCGTCGCTATGAGGAGTACCTCCTGCTCCGCGAGCGCATGGCCGAACACCTCGGCCCGCTTCCGGAGCCTGCGTGAGGGAGAGCCATGCGGCAGTCGGAATCCGCCGGAGCTGTGGTCGACCAACTCTGCGTACGTTCGGACCGATACCGCGGGGTGCCCTATTTGCCGGAATCTTCGAAAGTCACTGAAAACACGCCTCTGCGGCCATAAACTCGCAGGTCAAACAGT # Right flank : CTGCGGAGATCGGCTTCAGGGTCGCTGGGTCAGTTCACCGGAGCTTCTCGCGCGTCTGCGCGCCGCCGGTTGGCGGCGCGCAGACGGGTGGGGTGTGCTCGGTGCGGGGGCGGTCAGGCCCAGCAGCCGTTGACGGTGGCGGCGAGGCCGTCCATGGCGTCCTTGATGTCCGTCGGGTCGGCCGTCGAGTTGTTCTCGATGAAGGAGAAGATCCGCCAGTCGCCGTCCTCGGTCTTCGTGACACCGCTGAGGGCGATGGCACCGGTGAGGGTGCCGGTCTTGGCCTGGACCTTGCCGACGGCGCACTCGGAGTTGGGGTCGTCGAAGCGGCCCCACTCCGGGCCGAGGCTCGCCCCGGCCTCGCCGGCGACCGGCAGGCCCTCCAGGATCGAGCTGAGGGCGGGGGACTCGGTGATCGAGTCGAGGAGCTGCGCGAGGGTGGCGGCCGGGATGCGGTCGTCGCGGGAGAGGCCGCTGCCGTCGTGCATCTCGAAGTTGTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //